View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_3 (Length: 480)
Name: NF20948_low_3
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 22730426 - 22730072
Alignment:
| Q |
1 |
ataaaacgaaacaatatcaaaattaatttgttttaactttgaaattttgcatctaattaggggg-taaggaggtccttttaatactaattttaatccaaa |
99 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
22730426 |
ataaaacgaaacaatatcaaaagtaatttgttttaactttgaaattttgcatctaattaggggggtaaggag-tcctttttatactaattttaatccaaa |
22730328 |
T |
|
| Q |
100 |
aacccaaactctaaattaattcattaggaaaattggatatgtcacaaacacgcctgaaaagataaacattaaagatggtgtttttccctctatcgaaagg |
199 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
22730327 |
aatttaaactctaaattaattcattaggagaattggatatgtcacaaacacgcctgaaaaggtaaacattaaagatggagtttttccctctatcgaaagg |
22730228 |
T |
|
| Q |
200 |
gtatgctttttccctctaattggaaaacagtttttgctgagtaagcatttggtcattgttcattgtatttagttttctttttcaacaattcactaatctg |
299 |
Q |
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||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22730227 |
gtatgttttttccctctaattgaaaaacaggttttgctgagtaagaatttggtcattgttcattgtatttagttttctttttcaacaattcactaatctg |
22730128 |
T |
|
| Q |
300 |
tttatccttctcgaatgcaacttaattctatttcaaacacgattttcaaaggtttg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22730127 |
cttatccttctcgaatgcaacttaattctatttcaaacatgattttcaaaggtttg |
22730072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 3168496 - 3168850
Alignment:
| Q |
1 |
ataaaacgaaacaatatcaaaattaatttgttttaactttgaaattttgcatctaattaggggg-taaggaggtccttttaatactaattttaatccaaa |
99 |
Q |
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||||||| |||||||||||||| ||||||||| ||||||||||||| | |||||||||||||| ||||| ||||||||| ||||||||| ||| ||||| |
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| T |
3168496 |
ataaaaccaaacaatatcaaaagtaatttgttctaactttgaaattgttaatctaattaggggggtaagggggtcctttttatactaattataaaccaaa |
3168595 |
T |
|
| Q |
100 |
aacccaaactctaaattaattcattaggaaaattggatatgtcacaaacacgcctgaaaagataaacattaaagatggtgtttttccctctatcgaaagg |
199 |
Q |
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|| | |||||||||||||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
3168596 |
aatctaaactctaaattaaatcattaggcgtatttgatatgtcacaaacacgcctgaaaaggtaaacattaaagatggagttcttccctctatcgaaagg |
3168695 |
T |
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| Q |
200 |
gtatgctttttccctctaattggaaaacagtttttgctgagtaagcatttggtcattgttcattgtatttagttttctttttcaacaattcactaatctg |
299 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
3168696 |
gtatgctttttccctctaattgcaaaacagattttgctaagtaagcatttggtcattgttcattgta-ttagttttctttttcaacaattcaataatctg |
3168794 |
T |
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| Q |
300 |
tttatccttctcgaatgcaacttaattctatttcaaacacgattttcaaaggtttg |
355 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
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|
| T |
3168795 |
tttatccttctcgaatgcaacttaatgctatttcaaacatgattttcaaagttttg |
3168850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 367 - 464
Target Start/End: Complemental strand, 22729734 - 22729637
Alignment:
| Q |
367 |
cctctttgacagtgaatggggaattttgtaacatttatggcagattggttgtccatcatggctacctcttatgtaaagagtgaaataagtcaattgtg |
464 |
Q |
| |
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|||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
22729734 |
cctctttggcggtgaatggggaattttgtgacatttatggcagattggttgtctctcacggctacctcttatgtaaagggtgaaataagtcaattgtg |
22729637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 3131405 - 3131698
Alignment:
| Q |
17 |
tcaaaattaatttgttttaactttgaaattttgcatctaattagggg-gtaaggaggtccttttaatactaattttaatccaaaaacccaaactctaaat |
115 |
Q |
| |
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|||||| ||||| ||| ||| ||| ||||| |||||||||||| ||| |||||| ||||||||| ||||| ||| ||| ||||||| |||||| | || |
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| T |
3131405 |
tcaaaagtaattggttctaatttttaaattgtgcatctaattatgggagtaagg-ggtcctttttatactgattctaacccaaaaagataaactcgagat |
3131503 |
T |
|
| Q |
116 |
taattcattaggaaaattggatatgtcacaaacacgcctgaaaagataaacattaaagatggtgtttttccctctatcgaaagggtatgcttttt----- |
210 |
Q |
| |
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|||| ||||||| |||| |||||||| |||||||||| |||||| |||||||||||||||| |||||| ||||||| |||| | | || ||||| |
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| T |
3131504 |
taatccattaggcgaatttgatatgtctcaaacacgcc-gaaaaggtaaacattaaagatggagttttt-cctctattgaaatgctctgattttttttgt |
3131601 |
T |
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| Q |
211 |
---------ccctctaattggaaaacagtttttgctgagtaagcatttggtcattgttcattgtatttagttttctttttcaacaattcactaatctg |
299 |
Q |
| |
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| ||||| |||||||||||||| ||||||||||||| | ||||||||||||||| |||||| | |||||||||||||||| |||||| |
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| T |
3131602 |
atcatagtcacttctaactggaaaacagttttcgctgagtaagcatctaatcattgttcattgta-ttagttatatttttcaacaattcacaaatctg |
3131698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 449
Target Start/End: Complemental strand, 23839295 - 23839214
Alignment:
| Q |
367 |
cctctttgacagtgaatggggaattttgtaacatttatggcagattggttgtccatcatggctacctcttatgtaaagagtga |
449 |
Q |
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|||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
23839295 |
cctctttggtagtgaatggggaattttgtgacatttatggtagat-ggttgtccatcatggctacctcttatgtaaagggtga |
23839214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 14989023 - 14988950
Alignment:
| Q |
368 |
ctctttgacagtgaatggggaattttgtaacatttatggcagattggttgtccatcatggctacctcttatgta |
441 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
14989023 |
ctctttgacagtgaatgaggaattttatgacatttatggcagattgactgtccatcattattacctcttatgta |
14988950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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