View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_6 (Length: 412)
Name: NF20948_low_6
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 214 - 393
Target Start/End: Complemental strand, 25900419 - 25900241
Alignment:
| Q |
214 |
gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg |
313 |
Q |
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| T |
25900419 |
gagacctgttgcgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg |
25900320 |
T |
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| Q |
314 |
tatttcacatgatgtatgtaaactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgcggga |
393 |
Q |
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| T |
25900319 |
tatttcacatgatgtatgt-aactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgtggga |
25900241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 381
Target Start/End: Original strand, 40067818 - 40067980
Alignment:
| Q |
214 |
gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg |
313 |
Q |
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||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40067818 |
gagacctgtcgcgccttttggaagtgcaagtagaaagcctcatgttgattcttctcttttacatcgttgcttaccagatgagctgctctttgaggtattg |
40067917 |
T |
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| Q |
314 |
tatttcacatgatgtatgtaaactacactatttggtcatgactttttgatatggtgtgagaccagtta |
381 |
Q |
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| T |
40067918 |
catttcatatgatg-----cagctacactatttgatcatgacttcttgatattgtgtgacactagtta |
40067980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6844043 - 6844011
Alignment:
| Q |
13 |
cagaacctgtgagttagttagaagctattcagc |
45 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
6844043 |
cagaacctgtgagtgagttagaagctattcagc |
6844011 |
T |
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