View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_7 (Length: 381)
Name: NF20948_low_7
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_7 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 66 - 372
Target Start/End: Original strand, 41674 - 41980
Alignment:
| Q |
66 |
gttaaaaacatcactagatctgagatgatgctgagaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtccaaatc |
165 |
Q |
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| T |
41674 |
gttaaaaacatcactagagctgagatgatgctcagaagagaaaaaggattatgctattattgtgatgaacgattctctatatctcataaatgtccaaatc |
41773 |
T |
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| Q |
166 |
gtcattatttcttatttcaaactgaagaagaagaagaacctgacccaccaccaccgcaaatcacaccatcaactgaccctgaaacaccacctattgttac |
265 |
Q |
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| T |
41774 |
gtcattatttcttattccaaactgaagaagaagaagaacctgaaccaccaccacaacaaatcacaccatcagctgaccctgaaacaccacctattgttac |
41873 |
T |
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| Q |
266 |
ggaggagcaccacttgtcactgaatgccttgaacggttctgctcgtaaaggcaccatgcggttccacggtcaaattcagggtattgctatcacgattttg |
365 |
Q |
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| T |
41874 |
ggaggagcaccacttgtcactgaatgccttgaacggttctgctcgtaaaggcaccatgcggttccacagtcaaattcagggtattgctatcacgattttg |
41973 |
T |
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| Q |
366 |
ttggaca |
372 |
Q |
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| T |
41974 |
ttggaca |
41980 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 8596019 - 8596080
Alignment:
| Q |
99 |
agaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtcc |
160 |
Q |
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| T |
8596019 |
agaagagaaaaaggtttatgttatttttgtgatgagaaattctcattttctcataaatgtcc |
8596080 |
T |
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