View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20948_low_8 (Length: 308)
Name: NF20948_low_8
Description: NF20948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20948_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 1156110 - 1156386
Alignment:
| Q |
17 |
tatgacaatattcttttaacttttgattatctcattaccttaatttctcaatgctaaatagaaatccaaaaatattgttatacaatttcaattgttcaaa |
116 |
Q |
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| T |
1156110 |
tatgacaatattcttttaacttttgattatctcattaccttaatttctcaatgctaaatagaaatccaaaaatattgttatacaatttcaattgttcaaa |
1156209 |
T |
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| Q |
117 |
cctattttgaaatggaatagttattttatctattatgtataagaaataatcaatttaaaacgattcttcatgaacttttagaatttcatatcaataatcg |
216 |
Q |
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| T |
1156210 |
cctattttgaaatggaatagttattttatctattatgtataagaaataatcaatttaaaatgattcttcatgaaattttagaatttcatatcaataatca |
1156309 |
T |
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| Q |
217 |
tatcaaaagcagttcatataaaatgattcttctattatctacgaatagttcattttcatggaatttgggttctatat |
293 |
Q |
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| T |
1156310 |
tatcaaaagcagttcatataaaatgattcttctattatctacgaatagtccattttcatggaatttgggttctatat |
1156386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 37059074 - 37059231
Alignment:
| Q |
30 |
ttttaacttttgattatctcattaccttaatttctcaatgctaaatagaaatccaaa-aatattgttatacaatttcaattgttcaaacctattttgaaa |
128 |
Q |
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| T |
37059074 |
ttttaacttttcattaactaatgactttaatttctcaatgctaaataaaaataaaaataatactgttatacaattaaaattattcaaagctattttgaaa |
37059173 |
T |
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| Q |
129 |
tggaatagttattttatctattatgtataagaaataatcaatttaaaacgattcttca |
186 |
Q |
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| T |
37059174 |
atagataattgttttatctattatgtataagaaataatcaatttaaaatgattcttca |
37059231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 9643292 - 9643424
Alignment:
| Q |
54 |
ccttaatttctcaatgctaaatagaaatccaaaaatattgttatacaatttcaattgttcaaacctattttgaaatggaatagttattttatctattatg |
153 |
Q |
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||||||||||||||| | || || ||| ||||||||| | || | | ||| | ||||||||||||||||||||||| | || || ||||||| |||| |
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| T |
9643292 |
ccttaatttctcaattcaaattaaaaacccaaaaataacgataaatattttaacttgttcaaacctattttgaaatgaagtaatt-gattatctactatg |
9643390 |
T |
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| Q |
154 |
tataagaaataatcaatttaaaacgattcttcat |
187 |
Q |
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| T |
9643391 |
tataagaaataatcaattttaaatgattcttcat |
9643424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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