View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_high_6 (Length: 325)
Name: NF20949_high_6
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 43161751 - 43162047
Alignment:
| Q |
19 |
aagtgatcattacaaatacatgcaatgcaactaatatagattctcctaaattaaatgacttactttctatttgacaacttttctatattataaagaaatt |
118 |
Q |
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| T |
43161751 |
aagtgatgattactaatacatgcaatgcaactaatatagattctcttaaattaaatgacttactttctatttgacaacttttctatattataaagaaatt |
43161850 |
T |
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| Q |
119 |
cattatttcttatattaagtgaaaatgcttgcaactatgtagcatgtcagtcagaatatggttggatggcacttatatatacatcacatagtcctttcct |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43161851 |
cattatttcttctattaagtgaaaatgcttgcaactatgtagcatgtcagtcagaatatggttggatggcacttatatatacatcacatagtcctttcct |
43161950 |
T |
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| Q |
219 |
gccccatttcaaccgatcaactaccaaagttggttcaagtgaggatgacatttcatgttgccattatctctttctgttttcatactagattcttctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43161951 |
gccccatttcaaccgatcaactaccaaagttggttcaagtgaggatgacatttcatgttgccattatctctttctgttttcatactagattcttctt |
43162047 |
T |
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