View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_high_7 (Length: 324)
Name: NF20949_high_7
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 6888543 - 6888782
Alignment:
| Q |
11 |
cagagacagtcgttatccactatactcttttgacaagtgacatatactctttcaatgacttcacaacccataatgaaagcaacttaccaatgtttactca |
110 |
Q |
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| T |
6888543 |
cagagacagtcattctccactatactcttttgacaagtgacatatactctttcaatgacttcacaacccataatgaaagcaacttaccaatgtttactca |
6888642 |
T |
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| Q |
111 |
tactacattgctatcacattatcaaatccaacgtggaatacagtaataagctacataggttcaccccctttggggattttactatgttacaatatcatgt |
210 |
Q |
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| T |
6888643 |
tactacattgctatcacattatcaaatccaacgtggaatacagtaataagctacataggttcaccccctttggggattttactatgttacaatatcatgt |
6888742 |
T |
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| Q |
211 |
ggttttcatagaagttacaagaaattatataataatgtta |
250 |
Q |
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| T |
6888743 |
ggttttcatagaagttacaagaaattatataataatgtta |
6888782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 6889161 - 6889246
Alignment:
| Q |
241 |
aataatgttatatagatacgtgatttctatttgctataccaatggatatttgagttcagag--agagattagactatcacaataat |
324 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6889161 |
aataatgttatatagataggtgatttctatttgctataccaatggatatttgagttcagagaaagagattagactatcacaataat |
6889246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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