View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20949_low_1 (Length: 961)

Name: NF20949_low_1
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20949_low_1
NF20949_low_1
[»] chr8 (24 HSPs)
chr8 (648-951)||(27056562-27056859)
chr8 (242-429)||(27056116-27056304)
chr8 (462-656)||(27056336-27056532)
chr8 (648-800)||(9642358-9642504)
chr8 (648-744)||(29108829-29108920)
chr8 (589-663)||(15068498-15068572)
chr8 (648-744)||(39445583-39445674)
chr8 (648-740)||(17469249-17469336)
chr8 (648-744)||(27932403-27932494)
chr8 (648-744)||(32303051-32303142)
chr8 (762-800)||(9434978-9435016)
chr8 (593-659)||(9642277-9642343)
chr8 (650-744)||(45236055-45236144)
chr8 (648-744)||(8545356-8545447)
chr8 (648-743)||(20399583-20399673)
chr8 (647-692)||(15068594-15068639)
chr8 (648-699)||(10297488-10297539)
chr8 (648-744)||(24927939-24928030)
chr8 (768-807)||(36274971-36275010)
chr8 (589-659)||(24928057-24928127)
chr8 (706-744)||(30481481-30481519)
chr8 (589-659)||(32303169-32303239)
chr8 (706-743)||(1012610-1012647)
chr8 (594-659)||(9435153-9435218)
[»] chr7 (30 HSPs)
chr7 (648-951)||(5565314-5565612)
chr7 (648-800)||(10995841-10995982)
chr7 (588-659)||(5565216-5565287)
chr7 (771-862)||(27896603-27896694)
chr7 (648-744)||(45380102-45380193)
chr7 (648-744)||(10072461-10072552)
chr7 (650-744)||(33841073-33841162)
chr7 (649-743)||(12980373-12980462)
chr7 (648-744)||(16866164-16866255)
chr7 (648-742)||(18825879-18825968)
chr7 (648-744)||(3226953-3227044)
chr7 (647-699)||(18684009-18684061)
chr7 (648-692)||(27850333-27850377)
chr7 (648-744)||(17885460-17885551)
chr7 (648-699)||(31426043-31426094)
chr7 (648-744)||(39456022-39456112)
chr7 (648-699)||(42908048-42908099)
chr7 (648-744)||(43507440-43507531)
chr7 (762-800)||(8906704-8906742)
chr7 (649-698)||(3157119-3157168)
chr7 (650-725)||(29014961-29015037)
chr7 (648-692)||(41103698-41103742)
chr7 (648-728)||(22973399-22973474)
chr7 (593-655)||(8906503-8906565)
chr7 (589-659)||(17885578-17885648)
chr7 (648-738)||(27896482-27896567)
chr7 (589-659)||(35074583-35074653)
chr7 (590-659)||(10072579-10072648)
chr7 (651-688)||(10990871-10990908)
chr7 (650-699)||(30839143-30839192)
[»] chr4 (29 HSPs)
chr4 (649-924)||(10301900-10302170)
chr4 (590-659)||(10302198-10302267)
chr4 (648-728)||(29527824-29527899)
chr4 (782-838)||(45275362-45275418)
chr4 (648-744)||(5902622-5902713)
chr4 (648-744)||(6382280-6382371)
chr4 (648-744)||(7608966-7609057)
chr4 (648-699)||(43309519-43309570)
chr4 (648-744)||(44317531-44317622)
chr4 (648-743)||(1724318-1724408)
chr4 (762-800)||(3737720-3737758)
chr4 (650-744)||(47550363-47550452)
chr4 (648-692)||(32596192-32596236)
chr4 (648-744)||(11028069-11028160)
chr4 (648-691)||(12825469-12825512)
chr4 (648-744)||(31752452-31752543)
chr4 (648-744)||(48459477-48459568)
chr4 (648-743)||(6482043-6482133)
chr4 (589-663)||(45065359-45065433)
chr4 (587-699)||(31782649-31782768)
chr4 (651-692)||(39375321-39375362)
chr4 (587-659)||(37349226-37349298)
chr4 (588-663)||(1866459-1866534)
chr4 (648-727)||(3737789-3737863)
chr4 (648-744)||(31918566-31918657)
chr4 (648-699)||(41915004-41915055)
chr4 (617-663)||(10574370-10574416)
chr4 (762-800)||(43309426-43309464)
chr4 (589-659)||(43893341-43893411)
[»] chr2 (18 HSPs)
chr2 (762-869)||(10212273-10212380)
chr2 (593-656)||(22900906-22900969)
chr2 (648-800)||(22900729-22900876)
chr2 (648-744)||(15546735-15546826)
chr2 (648-744)||(7314655-7314746)
chr2 (649-744)||(24414140-24414230)
chr2 (589-654)||(10212520-10212585)
chr2 (648-692)||(37106730-37106774)
chr2 (588-659)||(30847055-30847126)
chr2 (593-659)||(15546853-15546919)
chr2 (650-728)||(38342528-38342601)
chr2 (767-800)||(15546676-15546709)
chr2 (651-692)||(37472769-37472810)
chr2 (589-650)||(39256370-39256431)
chr2 (650-699)||(43371584-43371633)
chr2 (648-728)||(14331534-14331609)
chr2 (589-659)||(6027811-6027881)
chr2 (589-663)||(26755845-26755919)
[»] chr1 (27 HSPs)
chr1 (762-884)||(38686514-38686641)
chr1 (650-800)||(10778576-10778721)
chr1 (648-744)||(29936407-29936498)
chr1 (648-798)||(34085170-34085317)
chr1 (648-744)||(18354087-18354178)
chr1 (648-692)||(5181077-5181121)
chr1 (648-744)||(17134938-17135029)
chr1 (588-663)||(19003575-19003650)
chr1 (648-744)||(19572519-19572610)
chr1 (648-744)||(36187227-36187318)
chr1 (650-744)||(28297925-28298014)
chr1 (647-699)||(19003672-19003724)
chr1 (649-692)||(3627993-3628036)
chr1 (648-699)||(16237311-16237362)
chr1 (648-744)||(51421849-51421940)
chr1 (589-659)||(20774675-20774745)
chr1 (589-655)||(38686763-38686829)
chr1 (639-689)||(44632139-44632189)
chr1 (648-692)||(24710885-24710929)
chr1 (616-663)||(10450014-10450061)
chr1 (706-744)||(13390404-13390442)
chr1 (706-744)||(23966864-23966902)
chr1 (589-659)||(29936531-29936601)
chr1 (648-698)||(33293538-33293588)
chr1 (650-692)||(42707846-42707888)
chr1 (648-689)||(16408983-16409024)
chr1 (650-691)||(16433176-16433217)
[»] chr3 (19 HSPs)
chr3 (765-869)||(10043401-10043505)
chr3 (648-800)||(30616288-30616437)
chr3 (648-744)||(23546949-23547040)
chr3 (648-744)||(44172616-44172707)
chr3 (648-744)||(44179316-44179407)
chr3 (649-744)||(39728661-39728751)
chr3 (648-692)||(48390824-48390868)
chr3 (648-731)||(10043289-10043367)
chr3 (588-659)||(39655182-39655253)
chr3 (589-659)||(7469688-7469758)
chr3 (706-744)||(34154404-34154442)
chr3 (648-692)||(44953442-44953486)
chr3 (588-663)||(1772308-1772383)
chr3 (592-655)||(10043195-10043258)
chr3 (648-744)||(34025944-34026035)
chr3 (648-744)||(39655280-39655371)
chr3 (648-744)||(49580054-49580145)
chr3 (707-744)||(22535902-22535939)
chr3 (648-689)||(49025720-49025761)
[»] scaffold0036 (1 HSPs)
scaffold0036 (648-743)||(33384-33474)
[»] chr6 (20 HSPs)
chr6 (648-744)||(5863390-5863481)
chr6 (648-744)||(27738762-27738853)
chr6 (648-744)||(32532530-32532621)
chr6 (648-744)||(32853834-32853925)
chr6 (648-743)||(2367317-2367407)
chr6 (648-744)||(3483930-3484021)
chr6 (589-659)||(3483833-3483903)
chr6 (650-737)||(14410864-14410946)
chr6 (590-659)||(10187991-10188060)
chr6 (648-689)||(18908933-18908974)
chr6 (651-733)||(29199895-29199972)
chr6 (652-692)||(20610993-20611033)
chr6 (648-728)||(28079703-28079778)
chr6 (648-692)||(30986290-30986334)
chr6 (648-744)||(12141375-12141466)
chr6 (651-698)||(20349095-20349142)
chr6 (588-659)||(30986361-30986432)
chr6 (589-659)||(31496542-31496612)
chr6 (589-659)||(31501928-31501998)
chr6 (648-689)||(14506126-14506167)
[»] chr5 (21 HSPs)
chr5 (648-744)||(4583109-4583200)
chr5 (648-744)||(4920816-4920907)
chr5 (587-658)||(10822447-10822518)
chr5 (648-727)||(10822534-10822608)
chr5 (648-744)||(15890197-15890287)
chr5 (648-744)||(17853301-17853391)
chr5 (589-663)||(2681320-2681394)
chr5 (762-800)||(10822647-10822685)
chr5 (650-744)||(12866561-12866650)
chr5 (649-726)||(23045000-23045072)
chr5 (651-728)||(28569032-28569104)
chr5 (652-744)||(22694913-22695000)
chr5 (706-744)||(1218745-1218783)
chr5 (589-655)||(4920938-4921004)
chr5 (706-744)||(10127071-10127109)
chr5 (706-744)||(12834635-12834673)
chr5 (585-663)||(23044898-23044976)
chr5 (620-689)||(27302714-27302784)
chr5 (589-659)||(33727912-33727982)
chr5 (651-692)||(33728012-33728053)
chr5 (648-689)||(38006477-38006518)
[»] scaffold0008 (2 HSPs)
scaffold0008 (589-663)||(67853-67927)
scaffold0008 (589-663)||(75696-75770)
[»] scaffold0244 (1 HSPs)
scaffold0244 (649-698)||(4589-4638)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-111; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 648 - 951
Target Start/End: Original strand, 27056562 - 27056859
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||       
T  27056562 gggtttttcccgatttcaaagtacaggtatgggacgggtaacggggttatatcta-----cccaccccgaacccatacacatactcgtcccaaatgtaaa 27056656  T
Q  748 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttc 847  Q
        |||       ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  27056657 aaa-ttacttttttacccccttttatataaatagaaacacaacgctagatcatttcactccagtccaaaaggcagatgtcattgtcagacgacacttttc 27056755  T
Q  848 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctaggttcatttcattcacaacgctgatcacatttctgggt 947  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27056756 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctgggttcatttcattcacaacgctgatcacatttctgggt 27056855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 242 - 429
Target Start/End: Original strand, 27056116 - 27056304
Alignment:
Q  242 gcctcaacatgtcggatacc-tttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagctcgaccaacatttggcctc 340  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27056116 gcctcaacatgtcggataccctttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagcttgaccaacatttggcctc 27056215  T
Q  341 atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcaagatctagaaaataaatc 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27056216 atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcgagatccagaaaataaatc 27056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 462 - 656
Target Start/End: Original strand, 27056336 - 27056532
Alignment:
Q  462 tactaagaacttcattatattctctgaattaatnnnnnnnn--gtttgcgacctaaaatgggcaaaccgagccaaccaaactgaacaatttgccgaaccg 559  Q
    |||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27056336 tactaagaacttcattatattctctgaattaataaaaaaaaaagtttgcgaccaaaaatgggcaaaccgagccaaccaaactgaacaatttgctgaaccg 27056435  T
Q  560 gaaagctgtaatccgttcaaaccgattcttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcc 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||    
T  27056436 gaaagctgtaatccgttcaaaccgattcttaggcatggcaacaatacccgtcctcgtgggtatccgcccatactcatctcgatttgacgggttttcc 27056532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 648 - 800
Target Start/End: Original strand, 9642358 - 9642504
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||     || || ||| ||||||||||||| ||||| ||||||||||||       
T  9642358 gggttttccccgatttcaaaacacgggtatgggacgggtaacggggttat-----atatatccatcccgaacccatactcatacccgtcccaaatgt-aa 9642451  T
Q  748 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 800  Q
        |||       |||||||||||||||||||||||||||||||||||||||    
T  9642452 aaaattatttttttacccctttttatataaatagaaacacaaccctagatcat 9642504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 29108829 - 29108920
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||| |||||||| |||  | |||||||||||||||||||||  |||||   || |||||||||||||||||||||||||| ||||||||||||    
T  29108829 gggtttttcccgattttaaaacatgggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccatacccgtcccaaatgt 29108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 589 - 663
Target Start/End: Original strand, 15068498 - 15068572
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||| |||||||||||||||||||||||    
T  15068498 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccgatttgacgggttttccccgattt 15068572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 39445583 - 39445674
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||| ||||||||||||  ||||||||||||| ||||||||| ||||     |  |||||||||||||| ||||||||||| ||||||||||||    
T  39445583 gggtttttcccgatttcaaaacacgggtatgggacaggtaacgggtttat-----aggtacccaccccgaactcatacccatacccgtcccaaatgt 39445674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 740
Target Start/End: Complemental strand, 17469336 - 17469249
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 740  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||| |||||||||||| || ||||||||    
T  17469336 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccaaacccatacccaaacccgtcccaa 17469249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 27932494 - 27932403
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||  |||||   |  |||||||||||||||||||| ||||  ||||||||||||    
T  27932494 gggttttccccgatttcaaaacacgggtatgggacgagtaacggg--tatat---aggtacccaccccgaacccatactcatatccgtcccaaatgt 27932403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 32303142 - 32303051
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  32303142 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 32303051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 762 - 800
Target Start/End: Complemental strand, 9435016 - 9434978
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagatcat 800  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9435016 acccctttttatataaatagaaacacaaccctagatcat 9434978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 659
Target Start/End: Original strand, 9642277 - 9642343
Alignment:
Q  593 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||  ||||||||||||||||||    
T  9642277 catggcaacaatactcgtccccatgggtacccgtccagacccatcccggtttgacgggttttccccg 9642343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 650 - 744
Target Start/End: Complemental strand, 45236144 - 45236055
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||| |||||||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||| |||||| ||||||||||||    
T  45236144 gttttccctgatttcaaaacacgggtatgggacgggtaatggg--tatat---aggtacccaccccgaacccatatccatacccgtcccaaatgt 45236055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 8545356 - 8545447
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||| ||||  ||     |||||||||||||||||| || |||||||||||||||    
T  8545356 gggttttctccgatttcaaaacacgggtatggaacgagtaacggggatatagata-----cccaccccgaacccatactcaaactcgtcccaaatgt 8545447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 648 - 743
Target Start/End: Complemental strand, 20399673 - 20399583
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    |||||||| |||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||||||||||| |||| || |||||| ||||    
T  20399673 gggttttctccgatttcaaaacacgggtatgggacgggtaacggg--tatat---agatacccaccccgaacccattcccaaacccgtcccgaatg 20399583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 692
Target Start/End: Original strand, 15068594 - 15068639
Alignment:
Q  647 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||    
T  15068594 cgggttttccccgatttcaaaatacgggtacgggacaggtaacggg 15068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 699
Target Start/End: Complemental strand, 10297539 - 10297488
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||||||||| |||||| | ||||| |||||||||| |||||    
T  10297539 gggttttccccgatttcaaaatacggggacgggacaggtaacggggatatat 10297488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 24928030 - 24927939
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||| ||| || ||  ||||||||| |||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  24928030 gggttttccctgatctcgaaacacgggtatgagacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 24927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 807
Target Start/End: Complemental strand, 36275010 - 36274971
Alignment:
Q  768 ttttatataaatagaaacacaaccctagatcatttcactc 807  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  36275010 ttttatataaatagaaacccaaccctaaatcatttcactc 36274971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 24928127 - 24928057
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | || || |||||||||  ||| | |||||||||||||||||||||||    
T  24928127 taggcatggcaacaaaacccatacccgcggttacccgcccgaaccaaacccaatttgacgggttttccccg 24928057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 706 - 744
Target Start/End: Original strand, 30481481 - 30481519
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  30481481 tacccaccccgaacccatacccaaactcgtcccgaatgt 30481519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 32303239 - 32303169
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||||||  | | | |||||||||||||||||||||||    
T  32303239 taggcatggcaacaaaacccatacccgtggttacccgcccgaaacaaacccaatttgacgggttttccccg 32303169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 743
Target Start/End: Complemental strand, 1012647 - 1012610
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  1012647 tacccaccccgaacccatacccaaactcgtcccgaatg 1012610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 659
Target Start/End: Complemental strand, 9435218 - 9435153
Alignment:
Q  594 atggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||||| | | |||||| ||||||| | ||| ||| ||||||||||| |||||||    
T  9435218 atggcaacaatacccgttcccatgggtatccgcccaaatccaccccgatttgacgggtattccccg 9435153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-102; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 648 - 951
Target Start/End: Original strand, 5565314 - 5565612
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||     |||||||| ||||||||||||||| | ||||||||||       
T  5565314 gggttttccctgatttcaaagtacggatatgggatgggtaacggggttatatgta-----cccacccctaacccatacccatacacatcccaaatgtaaa 5565408  T
Q  748 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttc 847  Q
        |         ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5565409 aaattactttttttacccccttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggcacttttc 5565508  T
Q  848 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctaggttcatttcattcacaacgctgatcacatttctgggt 947  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  5565509 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctgggttcatttctttcacaacgctgatcacatttctgggt 5565608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 648 - 800
Target Start/End: Original strand, 10995841 - 10995982
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    |||||||||||||||||||   |||||||||||||||||||| |||||||     || |||||||||||||||||||||||||| ||| ||||||||       
T  10995841 gggttttccccgatttcaagacacgggtatgggacgggtaacagggttat-----atatacccaccccgaacccatacccatacccgttccaaatgtaat 10995935  T
Q  748 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 800  Q
        ||        ||||||||||||||||||||||||||||||||| |||||    
T  10995936 tttttt------ttacccctttttatataaatagaaacacaaccctatatcat 10995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 588 - 659
Target Start/End: Original strand, 5565216 - 5565287
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||| ||| ||||||||| |||||||||    
T  5565216 ttaggcatgacaacaatacccgtccccatgggtacccgcccatacccaccccgatttgacggattttccccg 5565287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 771 - 862
Target Start/End: Original strand, 27896603 - 27896694
Alignment:
Q  771 tatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctcaa 862  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||| | || ||||||||||||||||  |||||  ||| |||||||||||    
T  27896603 tatataaatacaaacacaatcctagatcatttcactccggtccaaacgacaaatgtcattgtcagacgacactttcatgggttctctctcaa 27896694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 45380193 - 45380102
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||  |||||   |  ||||||||||||||||||||| | |||||||||||||||    
T  45380193 gggtttttcccgatttcaaaatacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacctaaactcgtcccaaatgt 45380102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 10072552 - 10072461
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||  |||||   |  |||||||||||||||||||||||||  ||||||||||||    
T  10072552 gggttttccccgatttcaaaacacgggtatggaacgggtaacggg--tatat---aggtacccaccccgaacccatacccataaccgtcccaaatgt 10072461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 650 - 744
Target Start/End: Complemental strand, 33841162 - 33841073
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||||||     || ||| |||||||||||||||| ||||| ||||||||||||    
T  33841162 gttttccccgatttcaaaacacgggtatgggacgggtaacatggttat-----atgtactcaccccgaacccatactcatacccgtcccaaatgt 33841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 649 - 743
Target Start/End: Complemental strand, 12980462 - 12980373
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    |||||||||||||||||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||||||| || |||||||||||    
T  12980462 ggttttccccgatttcaaaacacgggtatgggacgggtaatggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatg 12980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 16866255 - 16866164
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||| ||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  16866255 gggttttccccgatctcaaaacacgggtatgggacgagtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 16866164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 648 - 742
Target Start/End: Original strand, 18825879 - 18825968
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaat 742  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||||||||| |||||| || | ||||||||    
T  18825879 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccgtacccaaacccatcccaaat 18825968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 3226953 - 3227044
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||  |||     |  |||||||||||||||||||| ||||| | ||||||||||    
T  3226953 gggttttccccgatttcaaaacacgggtatgggacgggtaacaggaatat-----aggtacccaccccgaacccatactcatacacatcccaaatgt 3227044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 699
Target Start/End: Complemental strand, 18684061 - 18684009
Alignment:
Q  647 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  18684061 cgggttttccccgatttcaaaatacgggtacgggacgggtaacagggatatat 18684009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 27850333 - 27850377
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  27850333 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 27850377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 17885551 - 17885460
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||||| |||  | |||||||||||||||||||||  |||||   |  | || ||||||||||||||||||||| ||||||||||||    
T  17885551 gggttttccccgattttaaaacatgggtatgggacgggtaacggg--tatat---aggttccaaccccgaacccatacccatacccgtcccaaatgt 17885460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 699
Target Start/End: Complemental strand, 31426094 - 31426043
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||| |||||    
T  31426094 gggttttccccgatttaaaaatacgggtatgagacgggtaacggggatatat 31426043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 39456022 - 39456112
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  | |||||||||||||||||||||  |||||   |  ||||||||||||| |||||| ||||| ||||||||||||    
T  39456022 gggttttccccgatttcaaaacatgggtatgggacgggtaacggg--tatat---aggtacccaccccgaa-ccatactcatacccgtcccaaatgt 39456112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 699
Target Start/End: Original strand, 42908048 - 42908099
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| |||||    
T  42908048 gggttttccccgatttcaaaatacgggtacgggacgggtaatggggatatat 42908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 43507531 - 43507440
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  | ||||||| |||||||||||||    ||| ||  | |||||||| ||||||||||| |||||||||||||||||    
T  43507531 gggttttccccgatttcaaaacatgggtatgagacgggtaacggg----tatataggc-acccaccctgaacccatacctatactcgtcccaaatgt 43507440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 762 - 800
Target Start/End: Original strand, 8906704 - 8906742
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagatcat 800  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8906704 acccctttttatataaatagaaacacaaccttagatcat 8906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 698
Target Start/End: Complemental strand, 3157168 - 3157119
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 698  Q
    ||||||||||||||||||| || ||||||||||||| |||||||| ||||    
T  3157168 ggttttccccgatttcaaaatatgggtatgggacggataacggggatata 3157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 650 - 725
Target Start/End: Original strand, 29014961 - 29015037
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatcta-atctacccaccccgaacccatac 725  Q
    ||||| |||||||||||| |||||||| ||||||| || ||||| ||||| || || || |||||||||||||||||    
T  29014961 gtttttcccgatttcaaaatacgggtacgggacggatagcggggatatatatatatatatccaccccgaacccatac 29015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 692
Target Start/End: Complemental strand, 41103742 - 41103698
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||    
T  41103742 gggttttccccgatttcaaaacacgggtatgggacggttaacggg 41103698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 728
Target Start/End: Complemental strand, 22973474 - 22973399
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 728  Q
    ||||||||| |||||||||| |||||||| ||||||||||| ||||  |||||   | |||||||| ||||||||||||||    
T  22973474 gggttttccacgatttcaaaatacgggtacgggacgggtaatgggg--atatc---tgtacccacctcgaacccataccca 22973399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 655
Target Start/End: Original strand, 8906503 - 8906565
Alignment:
Q  593 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 655  Q
    ||||||||||||||||||   | |||||||||||||| |||||  || |||||||||||||||    
T  8906503 catggcaacaatacccgtttccatgggtacccgcccaaacccactccgatttgacgggttttc 8906565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 17885648 - 17885578
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||| ||||  ||| | |||||||||||||||||||||||    
T  17885648 taggcatggcaacaaaacccatacccgtggttacctgcccgaaccaaacccaatttgacgggttttccccg 17885578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 648 - 738
Target Start/End: Original strand, 27896482 - 27896567
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtccc 738  Q
    ||||||||||  ||||||||  | ||||||||||||||||||||||||||     ||  ||| ||||||||| ||||||||||| ||||||    
T  27896482 gggttttcccttatttcaaaacatgggtatgggacgggtaacggggttat-----atgcaccaaccccgaactcatacccatacccgtccc 27896567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 35074653 - 35074583
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||| |||||||||||||||    
T  35074653 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaattagacgggttttccccg 35074583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 659
Target Start/End: Complemental strand, 10072648 - 10072579
Alignment:
Q  590 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||| |||| | | || || |||||||||  ||| | |||||||||||||||||||||||    
T  10072648 aggcatggcaacaaaacccatacccgcggttacccgcccgaaccaaacccaatttgacgggttttccccg 10072579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 688
Target Start/End: Original strand, 10990871 - 10990908
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaa 688  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  10990871 ttttccccgatttcaaaatacgggtacgggacgggtaa 10990908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 699
Target Start/End: Original strand, 30839143 - 30839192
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || |||||    
T  30839143 gttttccctgatttcaaaatacgggtatgggacgagtaacgtggatatat 30839192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 8e-79; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 649 - 924
Target Start/End: Complemental strand, 10302170 - 10301900
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnnn 748  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||     |||||||||||||||||||||||  ||||||||||||        
T  10302170 ggttttccccgatttcaaagtacgggtatgagacgggtaacggggttatatgta-----cccaccccgaacccatacccatatccgtcccaaatgtaaaa 10302076  T
Q  749 nnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgt-cattgtcagacggtacttttc 847  Q
       |||       ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||    
T  10302075 aa-ttacttttttaccaccttttatataaatagaaacacaaccctagatcatttcactccggtccaaaagggagatgttcattgtcagacggcacttttc 10301977  T
Q  848 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctaggttcatttcattca 924  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  10301976 tggattctctctcaagcagttaacgctgctcacaaagctggtaattcaatattgaatttctgggttcatttcattca 10301900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 590 - 659
Target Start/End: Complemental strand, 10302267 - 10302198
Alignment:
Q  590 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||  || |||||| ||||||||||||    
T  10302267 aggcatggcaacaatacccgttcccgtgggtacccgcccatacccactccgatttgatgggttttccccg 10302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 648 - 728
Target Start/End: Complemental strand, 29527899 - 29527824
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 728  Q
    |||||||||||||||||||| |||||||| | |||||||||||||| |||     || |||||||||||||||||||||||    
T  29527899 gggttttccccgatttcaaaatacgggtacgtgacgggtaacggggatat-----atgtacccaccccgaacccataccca 29527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 45275418 - 45275362
Alignment:
Q  782 aaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacg 838  Q
    ||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||    
T  45275418 aaacacaaccctagatcatttcactccggtccaaacgacaaatgtcattgtcagacg 45275362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 5902622 - 5902713
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  5902622 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 5902713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 6382280 - 6382371
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||| ||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  6382280 gggttttctccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 6382371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 7609057 - 7608966
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  7609057 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 7608966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 699
Target Start/End: Complemental strand, 43309570 - 43309519
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  43309570 gggtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatat 43309519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 44317622 - 44317531
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44317622 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 44317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 648 - 743
Target Start/End: Original strand, 1724318 - 1724408
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    ||||||||||||||||||||  | ||||||||||||||||||  ||||||||   |  ||||||||||||||||||||||| || |||||| ||||    
T  1724318 gggttttccccgatttcaaaacatgggtatgggacgggtaac--ggttatat---aggtacccaccccgaacccatacccaaacccgtcccgaatg 1724408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 762 - 800
Target Start/End: Complemental strand, 3737758 - 3737720
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagatcat 800  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3737758 acccctttttatataaatagaaacacaaccctagatcat 3737720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 650 - 744
Target Start/End: Original strand, 47550363 - 47550452
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  47550363 gttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 47550452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 32596192 - 32596236
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  32596192 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 32596236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 11028160 - 11028069
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  |||||||||||||| |||||||| ||  |||||||||||    
T  11028160 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaactcatacccaaacctgtcccaaatgt 11028069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 691
Target Start/End: Original strand, 12825469 - 12825512
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacgg 691  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  12825469 gggttttccccgatttcaaaacacgggtatgggacgggtaacgg 12825512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 31752543 - 31752452
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  ||||||||| |||| |||||| |  |||||   |  | |||||||||||||||||||||||| ||||||||||||    
T  31752543 gggttttccccgatttcaaaacacgggtatgagacgagtaacgag--tatat---aggttcccaccccgaacccatacccatacccgtcccaaatgt 31752452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 48459568 - 48459477
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  | |||||||| ||||||||| ||  |||||   |  |||||||||||||||||||||||||| | ||||||||||    
T  48459568 gggttttccccgatttcaaaacatgggtatggaacgggtaacagg--tatat---aggtacccaccccgaacccatacccatacccatcccaaatgt 48459477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 648 - 743
Target Start/End: Original strand, 6482043 - 6482133
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    ||||||||||| |||| |||  |||||||||||||| |||| |||  |||||   || ||||||||||||||||||||||| || |||||||||||    
T  6482043 gggttttccccaatttaaaaacacgggtatgggacgagtaaaggg--tatat---atgtacccaccccgaacccatacccaaacccgtcccaaatg 6482133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 663
Target Start/End: Complemental strand, 45065433 - 45065359
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||| |||||||| ||||||||| ||||    
T  45065433 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccgatttgacgagttttccccaattt 45065359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 699
Target Start/End: Complemental strand, 31782768 - 31782649
Alignment:
Q  587 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgac-------gggttttccccgatttcaaagtacgggtatgg 679  Q
    ||||||||||||||||| | |||| | | |||||||||||||| ||| | | | |||||||       |||||||||||||||||||| |||||||| ||    
T  31782768 cttaggcatggcaacaaaatccgtgcccatgggtacccgcccaaaccaacctcgatttgactgggtttgggttttccccgatttcaaaatacgggtacgg 31782669  T
Q  680 gacgggtaacggggttatat 699  Q
     || |||||||||| |||||    
T  31782668 tacaggtaacggggatatat 31782649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 692
Target Start/End: Complemental strand, 39375362 - 39375321
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  39375362 ttttccccgatttcaaaatacgggtataggacgggtaacggg 39375321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 587 - 659
Target Start/End: Complemental strand, 37349298 - 37349226
Alignment:
Q  587 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||||||| |||||||||||    
T  37349298 cttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacaggttttccccg 37349226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 663
Target Start/End: Original strand, 1866459 - 1866534
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||| | |||||| |||||| | ||||||||| |||||| ||| | ||| ||||||||| |||||||||||||    
T  1866459 ttaggcaagacaacaaaacccgtgcacgtgggtactcgcccaaaccaaccccgatttgacggattttccccgattt 1866534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 727
Target Start/End: Complemental strand, 3737863 - 3737789
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccc 727  Q
    ||||||| ||| ||||||||  ||||||||||||||||||||| ||||||     || |||||| |||||||||||||||    
T  3737863 gggtttttcccaatttcaaaacacgggtatgggacgggtaacgaggttat-----atgtacccatcccgaacccataccc 3737789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 31918566 - 31918657
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||||| |||| |||    ||| || | ||||||||||||||||||||||| || ||||||||||||    
T  31918566 gggttttccccgatctcgaaacacgggtatgggacgagtaatggg----tatatagt-tacccaccccgaacccatacccaaacccgtcccaaatgt 31918657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 699
Target Start/End: Original strand, 41915004 - 41915055
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||| |||||    
T  41915004 gggttttccccgatttcaaaatatgggtacgggaagggtaacggggatatat 41915055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 617 - 663
Target Start/End: Original strand, 10574370 - 10574416
Alignment:
Q  617 gggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||    
T  10574370 gggtacccgcccaaatcaatcccgatttgacgggttttccccgattt 10574416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 762 - 800
Target Start/End: Complemental strand, 43309464 - 43309426
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagatcat 800  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  43309464 acccatttttatataaatagaaacacaacccaagatcat 43309426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 43893411 - 43893341
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||||||   || | |||||||||||||||||||||||    
T  43893411 taggcatggcaacaaaacccatacccgtggttacccgcccgagccaaacccaatttgacgggttttccccg 43893341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 762 - 869
Target Start/End: Complemental strand, 10212380 - 10212273
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctca 861  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||  | |||||||||||||| |||  | ||| |||| ||||||||||    
T  10212380 acccctttttatataaatacaaacacaaccctatatcatttcactctagtccaaacagaagatgtcattgtcacacgacattttgctgggttctctctca 10212281  T
Q  862 agcagtca 869  Q
    ||||||||    
T  10212280 agcagtca 10212273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 22900969 - 22900906
Alignment:
Q  593 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcc 656  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||    
T  22900969 catggcaacaatacccgtcctcatgggtacccgccctaacccatcccgatttgacgggttttcc 22900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 800
Target Start/End: Complemental strand, 22900876 - 22900729
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||     || |||||||||||||| ||||||||||| ||||||||| ||       
T  22900876 gggtttttcccgatttcaaaacacgggtatgggacgagtaacggggttat-----atatacccaccccgaactcatacccatacccgtcccaaacgtaaa 22900782  T
Q  748 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 800  Q
        |         ||||||||||| |||||||||||||||||||||||||||    
T  22900781 aaattattttttttacccctttttacataaatagaaacacaaccctagatcat 22900729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 15546826 - 15546735
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  ||||||||||||||||||||  ||||||     || ||||||||| |||||||||||||||| | ||||||||||    
T  15546826 gggttttccccgatttcaaaacacgggtatgggacgggtaacatggttat-----atatacccaccctgaacccatacccatacccttcccaaatgt 15546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 7314655 - 7314746
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||  |||||   |  | ||||||||||||||||||||| || ||||||||||||    
T  7314655 gggttttccccgattttaaaatacgagtatgggacgggtaacggg--tatat---aggttcccaccccgaacccatacccacacccgtcccaaatgt 7314746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 649 - 744
Target Start/End: Original strand, 24414140 - 24414230
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  24414140 ggttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 24414230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 589 - 654
Target Start/End: Complemental strand, 10212585 - 10212520
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggtttt 654  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||| ||| |||||||| |||||    
T  10212585 taggcatgacaacaatacccgtacctgtgggtacccgcccatacccaccccgatttgacgagtttt 10212520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 692
Target Start/End: Complemental strand, 37106774 - 37106730
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  37106774 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 37106730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 588 - 659
Target Start/End: Complemental strand, 30847126 - 30847055
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  30847126 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 30847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 15546919 - 15546853
Alignment:
Q  593 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||||| ||| | |||||||||||||| || || ||| |||||||| ||||||||||    
T  15546919 catggcaacaatacccatccccatgggtacccgcccaaactcacccccatttgacgagttttccccg 15546853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 650 - 728
Target Start/End: Original strand, 38342528 - 38342601
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 728  Q
    |||||||||||||| ||| ||||| || |||||||||||||||| |||     || |||||||||||||||||||||||    
T  38342528 gttttccccgattttaaaatacggatacgggacgggtaacggggatat-----atgtacccaccccgaacccataccca 38342601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 800
Target Start/End: Complemental strand, 15546709 - 15546676
Alignment:
Q  767 tttttatataaatagaaacacaaccctagatcat 800  Q
    ||||||||||||||||||||||||||||||||||    
T  15546709 tttttatataaatagaaacacaaccctagatcat 15546676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 692
Target Start/End: Original strand, 37472769 - 37472810
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  37472769 ttttccccgatttcaaaacacgggtatgggacgggtaacggg 37472810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 650
Target Start/End: Original strand, 39256370 - 39256431
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacggg 650  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||||||||||||||    
T  39256370 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccaatttgacggg 39256431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 699
Target Start/End: Complemental strand, 43371633 - 43371584
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||| ||| |||||||| |||||||||||||||| |||||    
T  43371633 gttttccccgattttaaaatacgggtacgggacgggtaacggggatatat 43371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 728
Target Start/End: Complemental strand, 14331609 - 14331534
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 728  Q
    ||||||||||| |||| ||| ||| ||||||||||||||||||||| |||     || ||||||| |||||||||||||||    
T  14331609 gggttttcccctatttaaaaatacaggtatgggacgggtaacggggatat-----atgtacccactccgaacccataccca 14331534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Original strand, 6027811 - 6027881
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||| |||||| |||| | ||||||| || ||||||  ||| | |||||||||||||||||||||||    
T  6027811 taggcatgacaacaaaacccatactcgtggttatccgcccgaaccaaacccaatttgacgggttttccccg 6027881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 663
Target Start/End: Complemental strand, 26755919 - 26755845
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    |||||||| |||||| |||||| | | |||||||| ||||| ||| | ||| |||||||||||||| ||||||||    
T  26755919 taggcatgacaacaaaacccgtgcccatgggtacctgcccaaaccaaccccgatttgacgggtttttcccgattt 26755845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 762 - 884
Target Start/End: Complemental strand, 38686641 - 38686514
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagat-----catttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctc 856  Q
    |||||||| |||||||||| ||| ||||||||||||     |||||||||||||| |||| || |||||||| |||||||||  |||||||||| |||||    
T  38686641 acccctttctatataaatacaaagacaaccctagattatttcatttcactccagttcaaatggaagatgtcactgtcagacgacacttttctgggttctc 38686542  T
Q  857 tctcaagcagtcaacgctgctcacaaag 884  Q
    |||||||||||||||   ||||||||||    
T  38686541 tctcaagcagtcaacatcgctcacaaag 38686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 650 - 800
Target Start/End: Original strand, 10778576 - 10778721
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnnnn 749  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||  ||      ||||||||||||||||| ||||| |||| |||||||         
T  10778576 gtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatagatat-----ccaccccgaacccatactcatacccgtctcaaatgtaaaaa 10778670  T
Q  750 nnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 800  Q
       ||       |||||||||||||||||||||||||||||||||||||||    
T  10778671 aaatatttttttacccctttttatataaatagaaacacaaccctagatcat 10778721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 29936498 - 29936407
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  29936498 gggttttccccgatctcaaaatacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 29936407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 648 - 798
Target Start/End: Complemental strand, 34085317 - 34085170
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    ||||||| ||||||||||||  ||| |||||||| ||||||||||||||||| ||     |||||||||||||||||||||||||||||| ||||||       
T  34085317 gggtttttcccgatttcaaaacacgagtatgggatgggtaacggggttatatgta-----cccaccccgaacccatacccatactcgtcctaaatgtaaa 34085223  T
Q  748 nnnnt--tannnnnnnacccctttttatataaatagaaacacaaccctagatc 798  Q
        |  |        |||||||||||||||||||||||||||||||||||||    
T  34085222 aaattattttttttttacccctttttatataaatagaaacacaaccctagatc 34085170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 18354087 - 18354178
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  | |||||||||||||||||||||  |||||   |  | ||||||||||||| |||||||||||||||||||||||    
T  18354087 gggttttccccgatttcaaaacatgggtatgggacgggtaacggg--tatat---aagttcccaccccgaaccgatacccatactcgtcccaaatgt 18354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 648 - 692
Target Start/End: Complemental strand, 5181121 - 5181077
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5181121 gggttttccccgatttcaaaatacgggtatgggacgggtaacggg 5181077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 17135029 - 17134938
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||  |||||   |  ||||  |||||||||||||||||||||||||||| ||||    
T  17135029 gggttttccccgatttcaaaacacgggtatgagacgggtaacggg--tatat---aggtaccatccccgaacccatacccatactcgtcccatatgt 17134938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 588 - 663
Target Start/End: Original strand, 19003575 - 19003650
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    |||||||||||||||| |||||| | | |||||||||||||| | | | ||| |||||||||||||||||||||||    
T  19003575 ttaggcatggcaacaaaacccgtgcccatgggtacccgcccaaagcaaccccgatttgacgggttttccccgattt 19003650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 19572519 - 19572610
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||| ||||||||||||  ||||||||||||| |||||||||  |||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  19572519 gggtttttcccgatttcaaaacacgggtatgggacaggtaacggg--tatat---aggtacccaccccgaacccatactcatacccgtcccaaatgt 19572610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 36187227 - 36187318
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||| ||||||||||||| || ||||||||||||    
T  36187227 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccctgaacccatacccaaacccgtcccaaatgt 36187318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 650 - 744
Target Start/End: Complemental strand, 28298014 - 28297925
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  28298014 gttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 28297925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 699
Target Start/End: Original strand, 19003672 - 19003724
Alignment:
Q  647 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||| |||||    
T  19003672 cgggttttccccgattacaaaatacgggtatgggacggataacggggatatat 19003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 649 - 692
Target Start/End: Original strand, 3627993 - 3628036
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  3627993 ggttttccccgatttcaaaacacgggtatgggacgggtaacggg 3628036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 699
Target Start/End: Original strand, 16237311 - 16237362
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 699  Q
    |||||||||||||||||||| |||||||| ||||||||||||| || |||||    
T  16237311 gggttttccccgatttcaaaatacgggtaagggacgggtaacgaggatatat 16237362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 51421940 - 51421849
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||| |||||| |||||  ||||||||||||||||||||  |  |||||   || ||||||||||||||||||||||| || ||||||||||||    
T  51421940 gggtttttcccgatctcaaaacacgggtatgggacgggtaacatg--tatat---atgtacccaccccgaacccatacccaaacccgtcccaaatgt 51421849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 20774745 - 20774675
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | ||||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  20774745 taggcatggcaacaaaacccatactcgtggttacccgcccgaaccaaacccaatttgacggattttccccg 20774675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 655
Target Start/End: Complemental strand, 38686829 - 38686763
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 655  Q
    |||||||| |||||||||  || | |||||||||||||| ||||||||||| |||| ||||||||||    
T  38686829 taggcatgacaacaatacatgtacccgtgggtacccgcctatacccatcccgattttacgggttttc 38686763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 639 - 689
Target Start/End: Original strand, 44632139 - 44632189
Alignment:
Q  639 caatttgacgggttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    ||||||||| ||||||| |||||||||||  ||||||||||||||||||||    
T  44632139 caatttgactggttttctccgatttcaaaacacgggtatgggacgggtaac 44632189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 692
Target Start/End: Complemental strand, 24710929 - 24710885
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  24710929 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 24710885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 663
Target Start/End: Original strand, 10450014 - 10450061
Alignment:
Q  616 tgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  10450014 tgggtacccgcccaaaccaaccccaatttgacgggttttccccaattt 10450061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 706 - 744
Target Start/End: Complemental strand, 13390442 - 13390404
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  13390442 tacccaccccgaactcatacccatacccgtcccaaatgt 13390404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 706 - 744
Target Start/End: Complemental strand, 23966902 - 23966864
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  23966902 tacccaccccgaacccatactcatacccgtcccaaatgt 23966864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 29936601 - 29936531
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||| |||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  29936601 taggcatgacaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 29936531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 648 - 698
Target Start/End: Original strand, 33293538 - 33293588
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 698  Q
    ||||||| ||||||||||||  ||||||||||||||||||| |||| ||||    
T  33293538 gggtttttcccgatttcaaaacacgggtatgggacgggtaatggggatata 33293588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 650 - 692
Target Start/End: Original strand, 42707846 - 42707888
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||| |||||||||||  |||||||||||||||||||||||    
T  42707846 gttttctccgatttcaaaacacgggtatgggacgggtaacggg 42707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 16409024 - 16408983
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  16409024 gggttttccccaatttcaaaacacgggtatgggacgggtaac 16408983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 16433176 - 16433217
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacgg 691  Q
    |||||| |||||||||||  ||||||||||||||||||||||    
T  16433176 gttttctccgatttcaaaacacgggtatgggacgggtaacgg 16433217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 765 - 869
Target Start/End: Original strand, 10043401 - 10043505
Alignment:
Q  765 cctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctcaagc 864  Q
    |||||||||||||||| |||||||| |||||||||||||||||  |||| || | || ||||||||||||||||  |||||| ||| || ||||||||||    
T  10043401 cctttttatataaatacaaacacaaacctagatcatttcactctggtccgaacgacaaatgtcattgtcagacgacacttttatgggttttctctcaagc 10043500  T
Q  865 agtca 869  Q
    |||||    
T  10043501 agtca 10043505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 648 - 800
Target Start/End: Original strand, 30616288 - 30616437
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 747  Q
    ||||||||||||||||||||  |||| |||||||||||||||| |||||||| |||     ||||||||||||||||||||||| ||||||||| ||       
T  30616288 gggttttccccgatttcaaaacacggatatgggacgggtaacgaggttatatataa-----ccaccccgaacccatacccatacccgtcccaaacgtaaa 30616382  T
Q  748 nnnnt--tannnnnnnacccctttttatataaatagaaacacaaccctagatcat 800  Q
        |  |        |||||||||||||||||||||||||||||||||||||||    
T  30616383 aaattattttttttttacccctttttatataaatagaaacacaaccctagatcat 30616437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 23546949 - 23547040
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| |||||||||||||||    
T  23546949 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaactcgtcccaaatgt 23547040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 44172707 - 44172616
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44172707 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatgt 44172616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 44179407 - 44179316
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44179407 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatgt 44179316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 649 - 744
Target Start/End: Complemental strand, 39728751 - 39728661
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||| |||| ||||| ||||||||||||| ||||||||||    ||| |||  ||||||||||||||||||||||| || ||||||||||||    
T  39728751 ggttttcctcgatctcaaaatacgggtatgggatgggtaacggg----tatataag-tacccaccccgaacccatacccaaacccgtcccaaatgt 39728661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 48390824 - 48390868
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  48390824 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 48390868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 731
Target Start/End: Original strand, 10043289 - 10043367
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatac 731  Q
    |||||||||| | |||||||  | ||||||||||||||||||||||||||     ||  |||||||||||||||||||||||||    
T  10043289 gggttttccctggtttcaaaacatgggtatgggacgggtaacggggttat-----atgcacccaccccgaacccatacccatac 10043367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 588 - 659
Target Start/End: Original strand, 39655182 - 39655253
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  39655182 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 39655253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 659
Target Start/End: Original strand, 7469688 - 7469758
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  7469688 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 7469758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 706 - 744
Target Start/End: Complemental strand, 34154442 - 34154404
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34154442 tacccaccccgaacccatacccatacccgtcccaaatgt 34154404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 44953442 - 44953486
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  44953442 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 44953486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 663
Target Start/End: Original strand, 1772308 - 1772383
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    |||||||||||||||| ||  || | | |||||||| ||||| ||| ||||| ||||||||| |||||||||||||    
T  1772308 ttaggcatggcaacaaaacatgtgcccatgggtacctgcccaaaccaatcccgatttgacggattttccccgattt 1772383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 655
Target Start/End: Original strand, 10043195 - 10043258
Alignment:
Q  592 gcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 655  Q
    ||||| ||||||||| |||   |||||||||||| ||||||| | |||||||||||||||||||    
T  10043195 gcatgacaacaatactcgtatccgtgggtacccgaccataccaaccccaatttgacgggttttc 10043258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 34026035 - 34025944
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  || |||||||||||||||||| |  |||||   |  |  ||||||||||| ||||||||||| ||||||||||||    
T  34026035 gggttttccccgatttcaaaacacaggtatgggacgggtaacgag--tatat---aggtttccaccccgaactcatacccatacccgtcccaaatgt 34025944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 39655280 - 39655371
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  |||||||||| |||||||||||| || |||| |||||||    
T  39655280 gggttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccaaacccatacccaaacccgtctcaaatgt 39655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 49580145 - 49580054
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  ||||||||||||||||||||| |  |||||   |  |||||||| ||||||||||| || || ||||||||||||    
T  49580145 gggttttccccgatctcaaaacacgggtatgggacgggtaacgag--tatat---aggtacccacctcgaacccatactcaaacccgtcccaaatgt 49580054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 744
Target Start/End: Original strand, 22535902 - 22535939
Alignment:
Q  707 acccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  22535902 acccaccccgaacccatacacatactcgtcctaaatgt 22535939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 49025761 - 49025720
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    |||||||||||||| |||||  ||||||||||||||||||||    
T  49025761 gggttttccccgatctcaaaacacgggtatgggacgggtaac 49025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 648 - 743
Target Start/End: Complemental strand, 33474 - 33384
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   || ||||||||||||||||||||||| ||||||||| ||||    
T  33474 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccaaactcgtcccgaatg 33384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 5863390 - 5863481
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||| |||||||||||||| || ||||||||||||    
T  5863390 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---agatacccacctcgaacccatacccaaacccgtcccaaatgt 5863481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 27738853 - 27738762
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  ||||||||||||||||||||   | |||||   || ||||||||||||||||||||||| || ||||||||||||    
T  27738853 gggttttccccgatttcaaaacacgggtatgggacgggtaac--agatatat---atgtacccaccccgaacccatacccaaacccgtcccaaatgt 27738762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 32532621 - 32532530
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  32532621 gggttttccccgatttcaaaacacgggtatgggacgggtaatggg--tatat---aggtacccaccccgaacccatactcatacccgtcccaaatgt 32532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 32853925 - 32853834
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  32853925 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 32853834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 648 - 743
Target Start/End: Complemental strand, 2367407 - 2367317
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 743  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || |||||||||||    
T  2367407 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatg 2367317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 3483930 - 3484021
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| || ||  |||||||||||| ||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  3483930 gggttttccccgatctcgaaacacgggtatgggatgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 3484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 659
Target Start/End: Original strand, 3483833 - 3483903
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | ||| ||| |||||||||  ||| | |||||||||||||||||||||||    
T  3483833 taggcatggcaacaaaacccatactcatggttacccgcccgaaccaaacccaatttgacgggttttccccg 3483903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 650 - 737
Target Start/End: Original strand, 14410864 - 14410946
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcc 737  Q
    |||||||| |||||||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || |||||    
T  14410864 gttttcccagatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcc 14410946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 659
Target Start/End: Original strand, 10187991 - 10188060
Alignment:
Q  590 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  10187991 aggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 10188060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 18908974 - 18908933
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  18908974 gggttttccccgatttcaaaatacggatatgggacgggtaac 18908933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 733
Target Start/End: Original strand, 29199895 - 29199972
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactc 733  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| ||||| | ||||    |||||||||||||||||| ||||    
T  29199895 ttttccccgatttcaaaatacgggtacgggacgggtaacagggatatatgt-atct----accccgaacccatacccaaactc 29199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 692
Target Start/End: Original strand, 20610993 - 20611033
Alignment:
Q  652 tttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  20610993 tttccccgatttcaaaatacgggtaggggacgggtaacggg 20611033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 728
Target Start/End: Original strand, 28079703 - 28079778
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 728  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||| |||     |  |||||||||||||||||||||||    
T  28079703 gggttttccccgatttcaaaacatgggtacgggacgggtaacggggatat-----aggtacccaccccgaacccataccca 28079778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 692
Target Start/End: Complemental strand, 30986334 - 30986290
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  30986334 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 30986290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 12141466 - 12141375
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||| || |||||  |||| |||||||||||| |||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  12141466 gggttttccccaatctcaaaacacggatatgggacgggtgacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 12141375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 698
Target Start/End: Complemental strand, 20349142 - 20349095
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 698  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  20349142 ttttccccgatttcaaaacacgggtatgggacgagtaacggggatata 20349095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 659
Target Start/End: Complemental strand, 30986432 - 30986361
Alignment:
Q  588 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | | |||||||||||||||||||||    
T  30986432 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaactcaatttgacgggttttccccg 30986361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 31496612 - 31496542
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||| ||| ||| | | |||||||||||||||||||||    
T  31496612 taggcatggcaacaaaacccatacccgtggttacccgtccaaaccaaactcaatttgacgggttttccccg 31496542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 31501998 - 31501928
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||| ||| ||| | | |||||||||||||||||||||    
T  31501998 taggcatggcaacaaaacccatacccgtggttacccgtccaaaccaaactcaatttgacgggttttccccg 31501928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 14506167 - 14506126
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    ||||||||||||||||||||  || |||||||||||||||||    
T  14506167 gggttttccccgatttcaaaacacaggtatgggacgggtaac 14506126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 4583200 - 4583109
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  | |||||||| ||||||||||||||| ||||||||||||    
T  4583200 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggttcccaccccaaacccatacccatacccgtcccaaatgt 4583109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 4920907 - 4920816
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  || |||||||||||||||||||| || ||||||||||||    
T  4920907 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtatccaccccgaacccatacccaaacccgtcccaaatgt 4920816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 587 - 658
Target Start/End: Original strand, 10822447 - 10822518
Alignment:
Q  587 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcccc 658  Q
    ||||| ||||||||||||||| |||| | |||||||||||||| ||||| | | ||||||||||||||||||    
T  10822447 cttagacatggcaacaatacctgtccccatgggtacccgcccaaacccacctcgatttgacgggttttcccc 10822518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 727
Target Start/End: Original strand, 10822534 - 10822608
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccc 727  Q
    |||||||| |||||||||||  |||||||| |||||||||||||||||||     || ||||||||||||||||||||||    
T  10822534 gggttttctccgatttcaaaacacgggtataggacgggtaacggggttat-----atgtacccaccccgaacccataccc 10822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Complemental strand, 15890287 - 15890197
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||| |||||||||||  |||||||||||||||||||||||  |||||   |  |||||| ||||||||||||||||||| ||||||||||||    
T  15890287 gggttttctccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtaccca-cccgaacccatacccatacccgtcccaaatgt 15890197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 648 - 744
Target Start/End: Original strand, 17853301 - 17853391
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||  ||||||||||||||||||||  || |||||   |  ||||||| |||||||||||||||||| ||||||||||||    
T  17853301 gggttttccccgatttcaaac-acgggtatgggacgggtaac--ggatatat---agatacccactccgaacccatacccatacccgtcccaaatgt 17853391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 663
Target Start/End: Complemental strand, 2681394 - 2681320
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||||||||||| || ||| | | |||||||||| ||| ||| | | |||||||||||||||||||||||||    
T  2681394 taggcatggcaacaaaactcgtgcccatgggtacccgtccaaaccaacctcaatttgacgggttttccccgattt 2681320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 762 - 800
Target Start/End: Original strand, 10822647 - 10822685
Alignment:
Q  762 acccctttttatataaatagaaacacaaccctagatcat 800  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10822647 acccctttttatataaatagaaacacaaccttagatcat 10822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 744
Target Start/End: Original strand, 12866561 - 12866650
Alignment:
Q  650 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||| |||||||||||  | |||||||||||||||||| ||  |||||   |  |||||||| ||||||||||||||||| ||||||||||||    
T  12866561 gttttctccgatttcaaaacatgggtatgggacgggtaacagg--tatat---aggtacccaccgcgaacccatacccatacccgtcccaaatgt 12866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 726
Target Start/End: Original strand, 23045000 - 23045072
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacc 726  Q
    ||||||||||||||||||| |||||||| |||| ||||||||| | |||     || |||||||||||||||||||||    
T  23045000 ggttttccccgatttcaaaatacgggtacgggatgggtaacggagatat-----atgtacccaccccgaacccatacc 23045072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 728
Target Start/End: Original strand, 28569032 - 28569104
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 728  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||     |  |||||||||||||||||||||||    
T  28569032 ttttccccgatttcaaaatgcgggtacgggacgggtaacggggatat-----aggtacccaccccgaacccataccca 28569104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 744
Target Start/End: Original strand, 22694913 - 22695000
Alignment:
Q  652 tttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||||||||| ||||| |||||||||||||||  |||||||  ||||    |  ||||||||||||||||||||||| || ||||||||||||    
T  22694913 tttccccgatctcaaaatacgggtatgggacgactaacggg--tatag---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 22695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 706 - 744
Target Start/End: Complemental strand, 1218783 - 1218745
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  1218783 tacccactccgaacccatacccatacccgtcccaaatgt 1218745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 655
Target Start/End: Complemental strand, 4921004 - 4920938
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 655  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||    
T  4921004 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttc 4920938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 706 - 744
Target Start/End: Complemental strand, 10127109 - 10127071
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  10127109 tacccaccccgaacccatacccaaacccgtcccaaatgt 10127071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 706 - 744
Target Start/End: Original strand, 12834635 - 12834673
Alignment:
Q  706 tacccaccccgaacccatacccatactcgtcccaaatgt 744  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  12834635 tacctaccccgaacccatacccatacccgtcccaaatgt 12834673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 585 - 663
Target Start/End: Original strand, 23044898 - 23044976
Alignment:
Q  585 ttcttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    |||||||||||||||| || | |||| | | |||||||||||||| ||| | ||| |||||||||||||| ||| ||||    
T  23044898 ttcttaggcatggcaaaaaaatccgtgcacatgggtacccgcccaaaccaaccccgatttgacgggtttttcccaattt 23044976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 620 - 689
Target Start/End: Original strand, 27302714 - 27302784
Alignment:
Q  620 tacccgcccatacccatcccaatttgacggg-ttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    |||||| ||| ||| |||||||||||||||| |||||||||||||||||  |||| |||| ||||| ||||    
T  27302714 tacccgtccaaaccaatcccaatttgacgggattttccccgatttcaaaacacggatatgagacggataac 27302784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 659
Target Start/End: Original strand, 33727912 - 33727982
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 659  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  33727912 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacggattttccccg 33727982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 692
Target Start/End: Original strand, 33728012 - 33728053
Alignment:
Q  651 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 692  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  33728012 ttttccccgatctcaaaacacgggtatgggacgggtaacggg 33728053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Original strand, 38006477 - 38006518
Alignment:
Q  648 gggttttccccgatttcaaagtacgggtatgggacgggtaac 689  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  38006477 gggttttccccaatttcaaaatacgggtatgggacgcgtaac 38006518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 663
Target Start/End: Complemental strand, 67927 - 67853
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||||||||||| |||||| | | || ||||||||||| ||| | ||| ||||||| |||||||||||||||    
T  67927 taggcatggcaacaaaacccgtgcccatgagtacccgcccaaaccaaccccgatttgacaggttttccccgattt 67853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 663
Target Start/End: Complemental strand, 75770 - 75696
Alignment:
Q  589 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 663  Q
    ||||||||||||||| |||||| | | || ||||||||||| ||| | ||| ||||||| |||||||||||||||    
T  75770 taggcatggcaacaaaacccgtgcccatgagtacccgcccaaaccaaccccgatttgacaggttttccccgattt 75696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 698
Target Start/End: Original strand, 4589 - 4638
Alignment:
Q  649 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 698  Q
    |||||||||| |||||||| |||||||||||||| |||||| ||| ||||    
T  4589 ggttttccccaatttcaaaatacgggtatgggacaggtaacagggatata 4638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University