View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_low_13 (Length: 246)
Name: NF20949_low_13
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 43162127 - 43162365
Alignment:
| Q |
2 |
aaggacaatgtaggataagtaataataataagcacataacaggacaatacaaaaggatacttaaattatagtttagcttgtgaccactgcatggcagctt |
101 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162127 |
aaggacaatgtaggataagtaat---aataagcacataacaggacaatacaaaaggatacttaaattatagtttagcttgtgaccactgcatggcagctt |
43162223 |
T |
|
| Q |
102 |
tataaataacgttaacatgcagtaattaaaatcacannnnnnnnnnct--cattattactattaacatgattaatcattatcannnnnnnnnnnnnnnct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| || |
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| T |
43162224 |
tataaataacgttaacatgcagtaattaaaatcacattttttttttctcccattatttctattaacatgattaatcattatcattttttgtattttttct |
43162323 |
T |
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| Q |
200 |
tccataattatatatcttgatagtgatttcatgacttctgtg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162324 |
tccataattatatatcttgatagtgatttcatgacttctgtg |
43162365 |
T |
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