View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_low_14 (Length: 225)
Name: NF20949_low_14
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 3810099 - 3809907
Alignment:
| Q |
14 |
attatactgaataagttgttgttggactaccaattgataaattattctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttctt |
113 |
Q |
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| T |
3810099 |
attatactgaataagctgttgttggactaccaattgataaattattctatatttggcttaatggattcaattgattaatgaaatgaactattttcttctt |
3810000 |
T |
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| Q |
114 |
ctcatgtacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatggaacaatatattaaagatgttagagtgcag |
206 |
Q |
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| T |
3809999 |
ctcatttacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatagaacgatatattaaagatgttagagtgcag |
3809907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 3810244 - 3810101
Alignment:
| Q |
60 |
ctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttcttctcatgtacgtgttgttacccataattcatttctagcaatagtgtt |
159 |
Q |
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| T |
3810244 |
ctatatttggcttaatggtgtcaattgataaatgaaataaactattttcttctctt--tttacgtgttgttacccataattgatttttaacaatagttgt |
3810147 |
T |
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| Q |
160 |
accgcaatttagaaatggaacaatatattaaagatgttagagtgca |
205 |
Q |
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| T |
3810146 |
accgcaacttagaaatggaacaatatctaaaagttgttacagtgca |
3810101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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