View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20949_low_15 (Length: 222)
Name: NF20949_low_15
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 62962 - 62758
Alignment:
| Q |
2 |
tatatataagaatttgaattatattctctatttggttatacaatatttttatacaagtacttatgataaagcacacgatattctgcatgtaattattcat |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62962 |
tatataaaagaatttgaattatattctctatttggttatacaatattttta--caagtacttatgataaagcacacgatattctgcatgtaattattcat |
62865 |
T |
|
| Q |
102 |
attcatacctctctttgtagtgaataaagaagtttctaccatgaagtcaaaagtaaaggcatttacatctaactgtgacaaaagaaaatgcattaatcat |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62864 |
at----acctctctttgtagtgaataaagaagtttctacca---agtcaaaagtaaaggcatttacatctaactgtgacaaaagaaaatgcattaatcat |
62772 |
T |
|
| Q |
202 |
cccatattcctatg |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
62771 |
cccatattcctatg |
62758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University