View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_low_16 (Length: 221)
Name: NF20949_low_16
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 4058566 - 4058729
Alignment:
| Q |
19 |
ttgacatggaaagagattgttcaagaggaataagtgatgaagaagacgctgaaacttcaaggaaaaaacttagactcaccaaagaccaatcaatcattct |
118 |
Q |
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| T |
4058566 |
ttgacatggaaagagattgttcaagaggaatcagtgatgaagaagacgctgaaacttcaaggaaaaaacttagactcaccaaagaccaatcaatcattct |
4058665 |
T |
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| Q |
119 |
cgaagagagtttcaaagaacacaacactcttaatcccgtaagtattaattaagtgtagttaagc |
182 |
Q |
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| T |
4058666 |
cgaagagagtttcaaagaacacaacactcttaatcccgtaagtattaattaagtgtagttaagc |
4058729 |
T |
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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 41452487 - 41452379
Alignment:
| Q |
51 |
agtgatgaagaagacgctgaaacttcaaggaaaaaacttagactcaccaaagaccaatcaatcattctcgaagagagtttcaaagaacacaacactctta |
150 |
Q |
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| T |
41452487 |
agtgatgaagaagacgctgaaactgctaggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacacaataccctta |
41452388 |
T |
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| Q |
151 |
atcccgtaa |
159 |
Q |
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| T |
41452387 |
atcccgtaa |
41452379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 23335995 - 23336039
Alignment:
| Q |
115 |
ttctcgaagagagtttcaaagaacacaacactcttaatcccgtaa |
159 |
Q |
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| T |
23335995 |
ttcttgaagaaagtttcaaagaacacaccactcttaatcctgtaa |
23336039 |
T |
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