View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20949_low_2 (Length: 520)

Name: NF20949_low_2
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20949_low_2
NF20949_low_2
[»] chr3 (1 HSPs)
chr3 (52-506)||(24144534-24144975)
[»] chr8 (3 HSPs)
chr8 (239-405)||(18184370-18184546)
chr8 (361-404)||(43108185-43108228)
chr8 (266-302)||(44058805-44058841)
[»] chr4 (4 HSPs)
chr4 (266-405)||(22318096-22318245)
chr4 (239-302)||(30666944-30667007)
chr4 (239-344)||(21519589-21519704)
chr4 (266-302)||(53210100-53210136)
[»] chr7 (3 HSPs)
chr7 (265-344)||(2512846-2512935)
chr7 (23-76)||(23457418-23457471)
chr7 (302-343)||(30961608-30961649)
[»] chr1 (2 HSPs)
chr1 (239-302)||(30058459-30058522)
chr1 (266-302)||(36567352-36567388)
[»] chr6 (3 HSPs)
chr6 (239-303)||(15528322-15528386)
chr6 (354-405)||(11753066-11753117)
chr6 (273-302)||(12216901-12216930)
[»] chr5 (1 HSPs)
chr5 (26-76)||(7148310-7148360)
[»] chr2 (1 HSPs)
chr2 (239-299)||(35813766-35813826)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 52 - 506
Target Start/End: Original strand, 24144534 - 24144975
Alignment:
Q  52 ttggtcaggctgtatgggagtgagcaagtttgtatgggagaagtttctcctttaatgtcctaactagaattggagacaacaccttctcaattcgatgaac 151  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  24144534 ttggtcaggttgtatgggagtgagcaagtttgtatgggagaagtttctcctttaatgtcctaactagaattgga--ctacaccttctcaattcgatgaac 24144631  T
Q  152 cttcgctaaaactcatttaactcccctcaagttacgagttgaggtacctatttgagagtttccattcttatgtataaattaaagatgatgttaacttgtg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  24144632 cttcgctaaaactcatttaactcccctcaagttacgagttgaggtacctatttgagagtttccattcatatgtataaattaaggatgatgctaacttgtg 24144731  T
Q  252 ccctaaaggcactggttaaagagcttaaaatagaattaacaaataaattttgataacttttgaaactttcaaagtattgaatgcacagcttttnnnnnnn 351  Q
    |||||||||||| ||||           || |    | | ||||||||||| ||||||||| |||||||||||| |||||||||||| |||||           
T  24144732 ccctaaaggcacaggtt-----------aacatttctcataaataaattttaataacttttaaaactttcaaagcattgaatgcacaacttttaagaaaa 24144820  T
Q  352 ngtttttatatttgcttccttaacttatgtcccaagaacacaagttaatatttctcattaattaatcaatcattataaatgtgcacaatctcttccaata 451  Q
     |||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  24144821 agtttctatatttgcatccttaacttatgtcccaagaacataagttaacatttctcataaattaatccatcattataaatgtgcacaatctcttccaata 24144920  T
Q  452 gttgtacgttgtgttcaaaaagcatataaatgaaccatagagtggtccatcttct 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24144921 gttgtacgttgtgttcaaaaagcatataaatgaaccatagagtggtccatcttct 24144975  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 18184370 - 18184546
Alignment:
Q  239 atgttaacttgtgccctaaaggcactggttaaagagcttaaaatagaattaacaaataaattt----------tgataacttttgaaactttcaaagtat 328  Q
    ||||||||||||||| | |   ||| |||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||    
T  18184370 atgttaacttgtgcctttagaacacaggttaaggagcttaaaatagaattaacaaataaatttaatatttaaatgataacttttgaaactttcaaagcat 18184469  T
Q  329 tgaatgcacagcttttnnnnnnnngtttttatatttgcttccttaacttatgtcccaagaacacaagttaatatttc 405  Q
    |||||||||| |||||        |||| ||||||||||||||||||||||| | |||  ||||||||||| |||||    
T  18184470 tgaatgcacaacttttaagaaaaagtttctatatttgcttccttaacttatgcctcaatgacacaagttaacatttc 18184546  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 43108228 - 43108185
Alignment:
Q  361 atttgcttccttaacttatgtcccaagaacacaagttaatattt 404  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  43108228 atttgatttcttaacttatgtcccaagaacacaagttaatattt 43108185  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 44058841 - 44058805
Alignment:
Q  266 gttaaagagcttaaaatagaattaacaaataaatttt 302  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  44058841 gttaaggagcttaaaatagaattaagaaataaatttt 44058805  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 405
Target Start/End: Complemental strand, 22318245 - 22318096
Alignment:
Q  266 gttaaagagcttaaaatagaattaacaaataaatttt----------gataacttttgaaactttcaaagtattgaatgcacagcttttnnnnnnnngtt 355  Q
    ||||| || ||||||||||||||||||||||||||||          ||||||||||||||||||||||| ||| |||||||| |||||        |||    
T  22318245 gttaaggaacttaaaatagaattaacaaataaattttatatttaaatgataacttttgaaactttcaaagcattaaatgcacaacttttaaaaaaaagtt 22318146  T
Q  356 tttatatttgcttccttaacttatgtcccaagaacacaagttaatatttc 405  Q
    | || ||||| |||||||||||||| ||||||| ||||| |||| |||||    
T  22318145 tctacatttggttccttaacttatgccccaagagcacaaattaacatttc 22318096  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 30667007 - 30666944
Alignment:
Q  239 atgttaacttgtgccctaaaggcactggttaaagagcttaaaatagaattaacaaataaatttt 302  Q
    ||||||||||||||||||| |||||  ||||| ||||||||||||||| | | |||||||||||    
T  30667007 atgttaacttgtgccctaagggcacaagttaaggagcttaaaatagaaattaaaaataaatttt 30666944  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 344
Target Start/End: Complemental strand, 21519704 - 21519589
Alignment:
Q  239 atgttaacttgtgccctaaaggcactggttaaagagcttaaaatagaattaacaaataaattt----------tgataacttttgaaactttcaaagtat 328  Q
    |||||||||||| | |||| ||||| | |||| || |||||||||||| ||||||||||||||          |||||| |||| |||||||||||| ||    
T  21519704 atgttaacttgtactctaagggcacagattaaggatcttaaaatagaaataacaaataaatttaatatttaaatgataatttttaaaactttcaaagcat 21519605  T
Q  329 tgaatgcacagctttt 344  Q
    |||||||||| |||||    
T  21519604 tgaatgcacaactttt 21519589  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 53210136 - 53210100
Alignment:
Q  266 gttaaagagcttaaaatagaattaacaaataaatttt 302  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53210136 gttaaagagtttaaaatagaattaacaaataaatttt 53210100  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 2512935 - 2512846
Alignment:
Q  265 ggttaaagagcttaaaatagaattaacaaataaattt----------tgataacttttgaaactttcaaagtattgaatgcacagctttt 344  Q
    |||||| ||||||||||||||||||||||||||||||          |||||| ||||||||||| |||||||||||||||||| |||||    
T  2512935 ggttaaggagcttaaaatagaattaacaaataaatttaatatttaaatgataatttttgaaacttccaaagtattgaatgcacaactttt 2512846  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 23457418 - 23457471
Alignment:
Q  23 aatgtgagttaactcacgtagaaggtattttggtcaggctgtatgggagtgagc 76  Q
    ||||||||||||||||||| |||||||||||||| ||  | |||||||||||||    
T  23457418 aatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagc 23457471  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 30961608 - 30961649
Alignment:
Q  302 tgataacttttgaaactttcaaagtattgaatgcacagcttt 343  Q
    |||||||||||||| ||||||||| |||||||||||| ||||    
T  30961608 tgataacttttgaatctttcaaagcattgaatgcacaacttt 30961649  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 30058522 - 30058459
Alignment:
Q  239 atgttaacttgtgccctaaaggcactggttaaagagcttaaaatagaattaacaaataaatttt 302  Q
    |||||||||||| |||||| |||||  |||||||| ||||||||||||||||  ||||||||||    
T  30058522 atgttaacttgtaccctaagggcacaagttaaagaacttaaaatagaattaagtaataaatttt 30058459  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 36567352 - 36567388
Alignment:
Q  266 gttaaagagcttaaaatagaattaacaaataaatttt 302  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  36567352 gttaaggagtttaaaatagaattaacaaataaatttt 36567388  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 15528322 - 15528386
Alignment:
Q  239 atgttaacttgtgccctaaaggcactggttaaagagcttaaaatagaattaacaaataaattttg 303  Q
    ||||||||||||||||||| |||||  ||||| ||| ||||||||||| | | ||||||||||||    
T  15528322 atgttaacttgtgccctaagggcacaagttaaggagattaaaatagaaattaaaaataaattttg 15528386  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 11753066 - 11753117
Alignment:
Q  354 tttttatatttgcttccttaacttatgtcccaagaacacaagttaatatttc 405  Q
    |||||||||||| || ||||||||||||||||||  |||||||||| |||||    
T  11753066 tttttatatttggtttcttaacttatgtcccaagggcacaagttaacatttc 11753117  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 12216901 - 12216930
Alignment:
Q  273 agcttaaaatagaattaacaaataaatttt 302  Q
    ||||||||||||||||||||||||||||||    
T  12216901 agcttaaaatagaattaacaaataaatttt 12216930  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 7148360 - 7148310
Alignment:
Q  26 gtgagttaactcacgtagaaggtattttggtcaggctgtatgggagtgagc 76  Q
    ||||||||||||||||||   |||||||||||||  |||||||||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagc 7148310  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 35813766 - 35813826
Alignment:
Q  239 atgttaacttgtgccctaaaggcactggttaaagagcttaaaatagaattaacaaataaat 299  Q
    ||||||||||||||||||| |||||  | |||||| |||||||||||| |||  |||||||    
T  35813766 atgttaacttgtgccctaagggcacaagataaagatcttaaaatagaaataaacaataaat 35813826  T

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