View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_low_3 (Length: 426)
Name: NF20949_low_3
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 33177327 - 33176936
Alignment:
| Q |
19 |
acatgtatcctatgttctctctcttcatactcagccgcgcgacaaaagctcaacctttcatcctttcctcattaaaaatggcggtgtgcagtcttatcag |
118 |
Q |
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| T |
33177327 |
acatgtatcctatgttctctctcttcatactcagccgcgcgacaaaagctcaacctttcatcctttcctcattaaaaatggcggtgtgcagtcttatcag |
33177228 |
T |
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| Q |
119 |
cgcagctccacctctaaacacctctcggggtcgttcaccaaggg-ttcctattgactactcactactatttcatccaaggagttctgatcggagtgtttt |
217 |
Q |
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||| | |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33177227 |
tgcaacaccacctttaaacacctctcggggtcgttcaccaaggggttcctatcgactactcactactatttcatccaaggagttctaatcggagtgtttt |
33177128 |
T |
|
| Q |
218 |
tccattgttgtgatcctctagtaaactttatttgttatttaaagcctctgcggacctctttcccttgagcttgtttttaggactctattattctgcacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
33177127 |
tccattgttgtgatcctctagtaaactttatttgttatttaaagccttggcggatctcgttcccttgagcttgatttcaggactctattattcggcaccg |
33177028 |
T |
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| Q |
318 |
ccatgggctcttcacgaattttctcttgcaatttttggtttaaaaatattggatttagttttttctggattcaagatat-ggtttctttcat |
408 |
Q |
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| T |
33177027 |
ccatgggctcttcacgaattttctcttgcaatttttggtttaaaaatattggatttagttgtttctgggttcaagatatgggtttctttcat |
33176936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 294
Target Start/End: Complemental strand, 23356992 - 23356790
Alignment:
| Q |
94 |
aaatggcggtgtgcagtcttatcagcgcagctccacctctaaacacctctcggggtcgttcaccaagg-gttcctattgactactcactactatttcatc |
192 |
Q |
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|||||| ||||||||| |||||||||||| | ||| ||||||||||||| |||| |||||||||| ||||| || |||| ||||||||||||||||| |
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| T |
23356992 |
aaatggtggtgtgcaggcttatcagcgcaacattacccttaaacacctctcgaggtcattcaccaaggagttccaatagacttctcactactatttcatc |
23356893 |
T |
|
| Q |
193 |
caaggagttctgatcggagtgtttttc-cattgttgtgatcctctagtaaactttatttgttatttaaagcctctgcggacctctttcccttgagcttgt |
291 |
Q |
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||||| || ||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||| ||||| |||| |||| ||| ||||||||||| |
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| T |
23356892 |
caaggggtactgatcggagtgtttttgtccttgttgtggtcctctagtaaactttatttgtgatttagagccttcgcggtcctcgttcacttgagcttgt |
23356793 |
T |
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| Q |
292 |
ttt |
294 |
Q |
| |
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||| |
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| T |
23356792 |
ttt |
23356790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 23356753 - 23356708
Alignment:
| Q |
349 |
tttttggtttaaaaatattggatttagttttttctggattcaagat |
394 |
Q |
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||||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
23356753 |
tttttggtttaaaaatattggatttggttgtttctagattcaagat |
23356708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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