View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20949_low_5 (Length: 362)
Name: NF20949_low_5
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20949_low_5 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: scaffold0631 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 182 - 358
Target Start/End: Complemental strand, 6433 - 6257
Alignment:
| Q |
182 |
tatgagaaagttattttttacgttgctggttacaaatcaatttgcgcagccagaggtagtatggtctaatacatggcagaatctaagtgatgatatagtg |
281 |
Q |
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| T |
6433 |
tatgagaaagttatttgtcacgttgctggttacaaatcaatttgtgcagccagaggtagtatggtctaagacatggcagaatctaagtgatgatatagtg |
6334 |
T |
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| Q |
282 |
tattgcaaaagacgcatcttgcgtgttccaggtatatgttttttctgctatcagtgattatattatcctatgcttct |
358 |
Q |
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| T |
6333 |
tatcgccaaagacacatcttgcgtgttccaggtatatgttttttctgctatcagtgattatattatcttatgcttct |
6257 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 923830 - 923889
Alignment:
| Q |
83 |
ctcatttaaagaggcttgcttcgctttggggttgttcgaagatgacacagagtttattga |
142 |
Q |
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| T |
923830 |
ctcattcaaagatgcttgcttcgctttggggttgttgggtgatgacaaagagtttattga |
923889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 44705019 - 44704960
Alignment:
| Q |
83 |
ctcatttaaagaggcttgcttcgctttggggttgttcgaagatgacacagagtttattga |
142 |
Q |
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| T |
44705019 |
ctcattcaaagatgcttgcttcgctttggggttgttgggtgatgacaaagagtttattga |
44704960 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 47740022 - 47740095
Alignment:
| Q |
87 |
tttaaagaggcttgcttcgctttggggttgttcgaagatgacacagagtttattgatgccatcaaccaggcatc |
160 |
Q |
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| T |
47740022 |
tttaaagaagcttgcttcgctttgggattgttggaggatgataaggagtttatagatgcaattaaccaagcatc |
47740095 |
T |
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