View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20949_low_6 (Length: 357)

Name: NF20949_low_6
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20949_low_6
NF20949_low_6
[»] chr1 (9 HSPs)
chr1 (21-351)||(39584498-39584828)
chr1 (129-338)||(9990644-9990853)
chr1 (125-246)||(30713314-30713435)
chr1 (128-244)||(25388377-25388493)
chr1 (129-225)||(27800833-27800929)
chr1 (128-240)||(28381550-28381662)
chr1 (157-203)||(38029786-38029832)
chr1 (138-216)||(40704053-40704131)
chr1 (128-216)||(5597929-5598017)
[»] chr2 (8 HSPs)
chr2 (21-351)||(13059404-13059734)
chr2 (122-338)||(36552229-36552445)
chr2 (123-296)||(44029592-44029765)
chr2 (128-246)||(36930772-36930890)
chr2 (128-214)||(1467594-1467680)
chr2 (128-270)||(6728188-6728330)
chr2 (128-240)||(13415270-13415382)
chr2 (129-216)||(37532742-37532829)
[»] chr8 (12 HSPs)
chr8 (21-351)||(136398-136728)
chr8 (21-351)||(18309248-18309577)
chr8 (28-351)||(25890549-25890872)
chr8 (122-338)||(37322142-37322358)
chr8 (135-296)||(17971621-17971782)
chr8 (129-214)||(9445345-9445430)
chr8 (123-210)||(37718429-37718516)
chr8 (129-216)||(42648816-42648903)
chr8 (128-240)||(8565098-8565210)
chr8 (128-225)||(26259757-26259854)
chr8 (128-244)||(28493171-28493287)
chr8 (129-177)||(38045946-38045994)
[»] chr7 (9 HSPs)
chr7 (21-351)||(17507235-17507552)
chr7 (21-351)||(17545662-17545979)
chr7 (116-343)||(15644791-15645019)
chr7 (123-296)||(551938-552111)
chr7 (128-184)||(32937473-32937529)
chr7 (128-210)||(2317494-2317576)
chr7 (128-246)||(6344075-6344193)
chr7 (124-233)||(45977002-45977111)
chr7 (145-246)||(28042895-28042996)
[»] chr3 (8 HSPs)
chr3 (21-343)||(26535522-26535844)
chr3 (28-343)||(14853396-14853712)
chr3 (128-298)||(8129538-8129708)
chr3 (125-298)||(6985486-6985659)
chr3 (128-337)||(3168500-3168706)
chr3 (129-236)||(25783092-25783199)
chr3 (130-236)||(32072482-32072589)
chr3 (128-174)||(8440922-8440968)
[»] chr5 (7 HSPs)
chr5 (122-343)||(32239359-32239580)
chr5 (129-216)||(28449225-28449312)
chr5 (128-298)||(35836796-35836966)
chr5 (123-218)||(17673675-17673764)
chr5 (128-173)||(22100358-22100403)
chr5 (128-164)||(30510563-30510599)
chr5 (128-164)||(30550903-30550939)
[»] chr6 (10 HSPs)
chr6 (122-339)||(13649352-13649569)
chr6 (122-339)||(18587935-18588151)
chr6 (117-338)||(3550660-3550881)
chr6 (123-296)||(20013704-20013875)
chr6 (128-240)||(28633694-28633806)
chr6 (280-343)||(7956990-7957053)
chr6 (117-214)||(7082507-7082604)
chr6 (125-214)||(8809764-8809853)
chr6 (128-246)||(15601911-15602029)
chr6 (128-213)||(33821020-33821105)
[»] chr4 (6 HSPs)
chr4 (125-218)||(47129242-47129335)
chr4 (128-246)||(54684197-54684315)
chr4 (128-216)||(43128045-43128133)
chr4 (128-248)||(7098075-7098194)
chr4 (128-240)||(17874483-17874595)
chr4 (128-240)||(19163617-19163729)
[»] scaffold0024 (1 HSPs)
scaffold0024 (129-216)||(87666-87753)
[»] scaffold0351 (1 HSPs)
scaffold0351 (128-240)||(13433-13545)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 39584498 - 39584828
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39584498 aacaatcaaaaatgaattataataacaatgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaaaagcaaag 39584597  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  39584598 ggtctatccaatgcctaaacacgacataggactagaccaccacaaatgatcaccaaaaataaaacaagcctttttggctttcaaccaccacaaagaataa 39584697  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39584698 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagccaaa 39584797  T
Q  321 gaagctgaagaaaagaccgtcttcatctcac 351  Q
    ||||||||||||||||||||||| |||||||    
T  39584798 gaagctgaagaaaagaccgtcttgatctcac 39584828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 338
Target Start/End: Original strand, 9990644 - 9990853
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaac 228  Q
    ||||||||||||||||||| ||||| || |||||||| || |||||||||| |||   | |||| || |||||||||||||||| ||| ||| | || ||    
T  9990644 caatgcctaaacacgacaatggactcgatcaccacaattgttcaccaaaaacaaagatagccttatttgctttcaaccaccacagagaataatattttac 9990743  T
Q  229 tttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaagaagctga 328  Q
    ||| |||| || |||| |||  ||  ||||||| || ||||| | ||||  |||||||||||||||||    |||||| || | ||| |||| |||||||    
T  9990744 tttgtctagtagctgaactattgagcattccttctgattaaataatctattatttctttcattccataggacccaaacagtaagaagccaaacaagctga 9990843  T
Q  329 agaaaagacc 338  Q
    ||||||||||    
T  9990844 agaaaagacc 9990853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 30713435 - 30713314
Alignment:
Q  125 tatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaact 224  Q
    ||||||||||||||||||||||   |||| ||||||||||| || |||||||| ||||||  |||||| | ||||||||||||||| || || ||| | |    
T  30713435 tatccaatgcctaaacacgacatgagactcgaccaccacaattgatcaccaaacataaaaacaaccttatgggctttcaaccaccataatgaataatatt 30713336  T
Q  225 taactttatctaataactgatc 246  Q
    | |||||||||||||| |||||    
T  30713335 ttactttatctaataattgatc 30713314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 25388377 - 25388493
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||| ||||||||||||||||||| |||||||||||||  |||||||| | |||   |||||||||  ||||||||||||| ||||| ||| | || |    
T  25388377 ccaatgtctaaacacgacaaaggactcgaccaccacaaatattcaccaaatacaaagacaacctttttaactttcaaccaccataaagaataatatttta 25388476  T
Q  228 ctttatctaataactga 244  Q
    ||||||||| |||||||    
T  25388477 ctttatctattaactga 25388493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 27800833 - 27800929
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaaccttt-ttggctttcaaccaccacaaagagtaaaactt 225  Q
    ||||||||||| | ||||||||||| |||||||||||||| ||||||||||  ||| | || ||| ||||||||||||||||||||||| ||| ||||    
T  27800833 caatgcctaaataggacaaaggactcgaccaccacaaatgctcaccaaaaa-gaaatacacgtttattggctttcaaccaccacaaagaataatactt 27800929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 28381550 - 28381662
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||| ||| | ||| ||||||  || |||||||| |||||   |||| |||||||||||| ||||||||| || | | | || |    
T  28381550 ccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaatacaacccttttggctttcatccaccacaatgaatgatatttta 28381649  T
Q  228 ctttatctaataa 240  Q
    |||||||||||||    
T  28381650 ctttatctaataa 28381662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 38029832 - 38029786
Alignment:
Q  157 ccaccacaaatggtcaccaaaaataaaacaaacctttttggctttca 203  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||||    
T  38029832 ccaccacaaatggtaaccaaaaggaaaacaaacttttttggctttca 38029786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 40704053 - 40704131
Alignment:
Q  138 aacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    |||||||||| ||||| ||||| |||||||| ||||||| || |||   | |||| ||| |||||||||||||||||||    
T  40704053 aacacgacaatggactcgaccatcacaaatgttcaccaataacaaagatagccttattgactttcaaccaccacaaaga 40704131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 5598017 - 5597929
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    ||||| ||||||||| |||| ||  | ||| ||||||  || |||||||| ||||||  |||||| |||||||||| ||||||||||||    
T  5598017 ccaatacctaaacacaacaatgggttcgacaaccacatctgatcaccaaacataaaaacaaccttattggctttcagccaccacaaaga 5597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 13059404 - 13059734
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||    
T  13059404 aacaatcaaaaatgaattataataacaatgctagatgatatcaaaagcacaagatgtgccaagatgccaccgcacacaccagtttacaacaaatacaaag 13059503  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| || |||    
T  13059504 ggtctatccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataa 13059603  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13059604 aactttactttatctaataactgatctagagatgattccttttgcttaaacaatctagcatttctttcattccatatagtccaaacggtcaaaagccaaa 13059703  T
Q  321 gaagctgaagaaaagaccgtcttcatctcac 351  Q
     |||||||||||||||||||||| |||||||    
T  13059704 taagctgaagaaaagaccgtcttgatctcac 13059734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 338
Target Start/End: Original strand, 36552229 - 36552445
Alignment:
Q  122 gtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaa 221  Q
    |||||||||||| |||||||||||| |||||| |||||||||| ||| |  ||||| | ||||| |  |||||||||||||||||| |||||||| |||     
T  36552229 gtctatccaatgtctaaacacgacagaggactcgaccaccacatatgttttccaaatacaaaactagtctttttggctttcaaccatcacaaagaataat 36552328  T
Q  222 acttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaag 321  Q
    | || ||||| | || || |||| ||| |||  |||| ||||| ||||| | | ||| ||||||||||||||||| | ||||||| || | ||| ||||     
T  36552329 attttactttgtttagtagctgaactatagagcattctttttgtttaaataatatagtatttctttcattccataaaatccaaacagttagaagccaaat 36552428  T
Q  322 aagctgaagaaaagacc 338  Q
    |||||||||||| ||||    
T  36552429 aagctgaagaaaggacc 36552445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 44029765 - 44029592
Alignment:
Q  123 tctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaa 222  Q
    ||||||||||||||||| ||||||||  ||||||||||||||  || |||| ||||| |||   ||||||||||||||||| |||||| ||||  |   |    
T  44029765 tctatccaatgcctaaatacgacaaattactagaccaccacatgtgttcactaaaaacaaacataacctttttggctttcagccaccataaaggatggta 44029666  T
Q  223 cttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccata 296  Q
     || ||||| ||||||| |||||||||||   |||| || || ||||| | |||||||||||||||||||||||    
T  44029665 ttttactttgtctaatagctgatctagagtgcattctttctgtttaaataatctagcatttctttcattccata 44029592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 36930772 - 36930890
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    ||||||||||||||||||| ||| || |||||||||||||| ||||||||  |||||  |||||| |  ||||||||||||||||| || ||  | || |    
T  36930772 ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaacgtaaaaacaaccttatgtgctttcaaccaccacaatgaatagtatttta 36930871  T
Q  228 ctttatctaataactgatc 246  Q
    ||||||||||||| |||||    
T  36930872 ctttatctaataattgatc 36930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 1467594 - 1467680
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaa 214  Q
    ||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||  | | || || || |||||||||||||||    
T  1467594 ccaatgcataaacacgacaaagagctcgaccaccacaaatggtcaccaaaaataaaaagagctttattagccttcaaccaccacaaa 1467680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 270
Target Start/End: Complemental strand, 6728330 - 6728188
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||| ||| | ||| ||||||  || |||||||| | ||||  |||| | || ||||||| |||||||||||| | | |||| |    
T  6728330 ccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacacaaaaacaaccctattagctttcagccaccacaaagaatgatacttta 6728231  T
Q  228 ctttatctaataactgatctagagatgattccttttgcttaaa 270  Q
    ||||||||||||| ||| ||| |||   ||| |||||||||||    
T  6728230 ctttatctaataattgaactaaagaactttctttttgcttaaa 6728188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 13415270 - 13415382
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||| ||| | ||| ||||||  || |||||||| |||||   |||| | |||||||||| |||||||||||| | | |||| |    
T  13415270 ccaatgcctaaacacgacaatggattcgacaaccacatctgatcaccaaacataaatacaaccctattggctttcagccaccacaaagaatgatacttta 13415369  T
Q  228 ctttatctaataa 240  Q
    |||| ||||||||    
T  13415370 ctttgtctaataa 13415382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 37532829 - 37532742
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    ||||||||| ||||||||| | ||| |||||||||||||| |||||||| | |||   |  |||||||| ||||||||||||||||||    
T  37532829 caatgcctagacacgacaatgaactcgaccaccacaaatgttcaccaaatacaaagatagtctttttggttttcaaccaccacaaaga 37532742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 136398 - 136728
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    |||||| ||||||| |||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||    
T  136398 aacaataaaaaatggattataataacaatgcaagatgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaag 136497  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
     ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| || |||    
T  136498 tgtctatccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataa 136597  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  136598 aactttactttatctaataactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccatatagtccaaacggtcaaaaggcaaa 136697  T
Q  321 gaagctgaagaaaagaccgtcttcatctcac 351  Q
     |||||||||||||||| ||||| |||||||    
T  136698 taagctgaagaaaagactgtcttgatctcac 136728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 18309577 - 18309248
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    ||||||||||||||| ||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   |||||    
T  18309577 aacaatcaaaaatga-ttataataacaatgcaagatgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaataaatacaaag 18309479  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
    | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| || |||    
T  18309478 gatctatccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaggaataa 18309379  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||    
T  18309378 aactttactttatctaataactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccatatagtccaaactgtcaaaagccaaa 18309279  T
Q  321 gaagctgaagaaaagaccgtcttcatctcac 351  Q
     |||||||||||||||||||||| |||||||    
T  18309278 taagctgaagaaaagaccgtcttgatctcac 18309248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 28 - 351
Target Start/End: Original strand, 25890549 - 25890872
Alignment:
Q  28 aaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaagggtctat 127  Q
    ||||||| |||||||||||| ||| | ||||||||||||| |||||   ||||||||||||||||||||||| |||||||| |||   ||||||||||||    
T  25890549 aaaaatggattataataacaatgcaagatgatatcaaaagtacaaggaatgccaagataccaccgcacacacaagtttacatcaaatacaaagggtctat 25890648  T
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    ||||||||||||||||||| |||||| |||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |    
T  25890649 ccaatgcctaaacacgacataggactggaccaccacatatgatcaccaaaaacaaaacaagcctttttggctttcaaccaccacaaagaataaaacttta 25890748  T
Q  228 ctttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaagaagctg 327  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  25890749 ctttatctaataactgatctaaagatgattccttttgcttaaacaatctagcatttctttcattccatatagtccaaacggtcaaaagccaaataagctg 25890848  T
Q  328 aagaaaagaccgtcttcatctcac 351  Q
    ||||||||| |||||| |||||||    
T  25890849 aagaaaagatcgtcttgatctcac 25890872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 338
Target Start/End: Original strand, 37322142 - 37322358
Alignment:
Q  122 gtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaa 221  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||| | ||||||| |||||||| ||||||||||||||||||| |||     
T  37322142 gtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttgactttcaaccaccacaaagaataat 37322241  T
Q  222 acttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaag 321  Q
    | || ||||| |||| ||  ||||||| |||||| || |||||  |||| | ||||||||||| ||||||||||||  |||||||||||| ||| ||||     
T  37322242 attttactttgtctagtagttgatctatagatgactctttttgtataaataatctagcatttcgttcattccatatgatccaaacggtcagaagccaaat 37322341  T
Q  322 aagctgaagaaaagacc 338  Q
    || ||||||||||||||    
T  37322342 aaactgaagaaaagacc 37322358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 296
Target Start/End: Complemental strand, 17971782 - 17971621
Alignment:
Q  135 ctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaactttatc 234  Q
    ||||||| ||||||||||||||||||||||  || |||||| ||| ||||  | |||||||| |||||| |||||||||| | |   | || ||||| ||    
T  17971782 ctaaacatgacaaaggactagaccaccacatgtgttcaccataaacaaaaatagcctttttgactttcagccaccacaaataatggtattttactttgtc 17971683  T
Q  235 taataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccata 296  Q
    ||||| | || |||||||| |||| || || ||||| | |||||||||||||||||||||||    
T  17971682 taatagcagaactagagatcattctttctgtttaaataatctagcatttctttcattccata 17971621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 9445430 - 9445345
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaa 214  Q
    ||||||||||||||||||| ||||| ||||||||||| || |||| ||||| |||   || ||| |||||||||||||||||||||    
T  9445430 caatgcctaaacacgacaatggactcgaccaccacaattgttcacaaaaaacaaagacaatcttattggctttcaaccaccacaaa 9445345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 37718429 - 37718516
Alignment:
Q  123 tctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccacca 210  Q
    |||||| ||| ||||||||||||| ||||||||||||||| |  || |||||||||||||||  |  ||||||| |||||||||||||    
T  37718429 tctatctaatacctaaacacgacagaggactagaccaccatatgtgttcaccaaaaataaaaatagtctttttgactttcaaccacca 37718516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 42648816 - 42648903
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    |||||||||||||||||||| | ||  |||||||||||||||||||||||| ||||  |  ||| ||||| |||| ||||||||||||    
T  42648816 caatgcctaaacacgacaaatggctcaaccaccacaaatggtcaccaaaaacaaaaacagtcttattggccttcagccaccacaaaga 42648903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 8565210 - 8565098
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||| ||||| ||| | |||  |||||  || |||||||||| ||||  ||||||  | ||||||| |||||||||||| | | |||| |    
T  8565210 ccaatgcctaaacaagacaatggattcgacacccacatctgatcaccaaaaacaaaaacaaccttactagctttcagccaccacaaagactgatacttta 8565111  T
Q  228 ctttatctaataa 240  Q
    |||||||||||||    
T  8565110 ctttatctaataa 8565098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 26259757 - 26259854
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaactt 225  Q
    ||||||||||||||||||||||  ||   |||||||||||| ||| | || | ||||  ||| ||||| ||||||| |||||||||||| ||| ||||    
T  26259757 ccaatgcctaaacacgacaaagagctcatccaccacaaatgatcatcgaatacaaaagtaacattttttgctttcagccaccacaaagaataatactt 26259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 28493171 - 28493287
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||||||| | | ||| |||||||| || ||||||| |||   |  |||||| ||||||| | | || ||||| ||| ||||||    
T  28493171 ccaatgcctaaacacgacaaaggatttgcccatcacaaatgttcgccaaaaacaaacgcagtctttttagctttcagctatcataaagaataagacttaa 28493270  T
Q  228 ctttatctaataactga 244  Q
     ||||| ||||| ||||    
T  28493271 ttttatataatagctga 28493287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 38045946 - 38045994
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaa 177  Q
    |||||||||||||||||||||| || | | |||||||||| ||||||||    
T  38045946 caatgcctaaacacgacaaagggctcgtctaccacaaatgatcaccaaa 38045994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 17507552 - 17507235
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    |||||||||||||| |||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||    
T  17507552 aacaatcaaaaatggattataataacaatgcaagatgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaag 17507453  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||  | |||    
T  17507452 ggtctatccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaataaaacaagcctttttggctttcaaccaccacaagaaataa 17507353  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
    |||||             |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| | |||||||| ||||    
T  17507352 aactt-------------aactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccaaatagtccaacctgtcaaaagccaaa 17507266  T
Q  321 gaagctgaagaaaagaccgtcttcatctcac 351  Q
     |||||||||||||||||||||| |||||||    
T  17507265 taagctgaagaaaagaccgtcttgatctcac 17507235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 17545662 - 17545979
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    |||||||||||||| |||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||    
T  17545662 aacaatcaaaaatggattataataacaatgcaagatgatatcaaaagcacaaggtgtgccaagataccaccgcacacaccagtttacaacaaatacaaag 17545761  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||  | |||    
T  17545762 ggtctatccaatgcctaaacacgacataggactagaccaccacatatggtcaccaaaaataaaacaagcctttttggctttcaaccaccacaagaaataa 17545861  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
    ||||             ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| | |||||||| ||||    
T  17545862 aact-------------taactgatctaaagatgattccttttgcttaaacaatctagcgtttctttcattccaaatagtccaacctgtcaaaagccaaa 17545948  T
Q  321 gaagctgaagaaaagaccgtcttcatctcac 351  Q
     |||||||||||||||||||||| |||||||    
T  17545949 taagctgaagaaaagaccgtcttgatctcac 17545979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 116 - 343
Target Start/End: Original strand, 15644791 - 15645019
Alignment:
Q  116 caaagggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaag 215  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| ||| |||| | ||||||| | ||||||| |||||||||||||||||    
T  15644791 caaagagtctatccaacgcctaaacacgacataggactagaccaccacatatgatcatcaaatacaaaacaagcatttttgggtttcaaccaccacaaag 15644890  T
Q  216 agtaaaactta-actttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaa 314  Q
    | ||| ||||  ||||| |||| || |||||||| |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||||||| ||    
T  15644891 aataatacttttactttgtctagtagctgatctaaagatgactccttttgattaaataatctagcatttctttcatttcatatggtccaaacggtcagaa 15644990  T
Q  315 gtcaaagaagctgaagaaaagaccgtctt 343  Q
    |||||| ||||||||||||||||| ||||    
T  15644991 gtcaaataagctgaagaaaagaccatctt 15645019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 552111 - 551938
Alignment:
Q  123 tctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaa 222  Q
    |||||| ||||||||||||||||| |||||||||||||||||  || |||||||||| ||||  | |||| ||| ||||||||| |||||| |||| | |    
T  552111 tctatctaatgcctaaacacgacataggactagaccaccacatgtgttcaccaaaaacaaaagtagccttcttgactttcaaccgccacaacgagtgata 552012  T
Q  223 cttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccata 296  Q
     || ||||| ||||| | |||  ||| |||  |||| || || ||||| | | || ||||||||||||||||||    
T  552011 ttttactttgtctaaaagctgcactaaagagcattctttctgtttaaataatatatcatttctttcattccata 551938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 32937529 - 32937473
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaa 184  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||    
T  32937529 ccaatgcctaaacaagacaaaggactcgaccaccacaattggtcaccaaaaacaaaa 32937473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 2317494 - 2317576
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccacca 210  Q
    ||||||||||||||||||||  |||| ||||||||||| || |||||||| ||||||  |||||| | |||||||| ||||||    
T  2317494 ccaatgcctaaacacgacaagagactcgaccaccacaattgatcaccaaacataaaaacaaccttatgggctttcatccacca 2317576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 6344193 - 6344075
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    ||||||||||||||||||| ||| || |||||||||||||| ||||||||  |||||  |||||| |   ||||||||||||| || || ||  | || |    
T  6344193 ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcaccaaacgtaaaaacaaccttatgtactttcaaccaccataatgaatagtatttta 6344094  T
Q  228 ctttatctaataactgatc 246  Q
    ||||||||||||| |||||    
T  6344093 ctttatctaataattgatc 6344075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 45977111 - 45977002
Alignment:
Q  124 ctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaac 223  Q
    |||| |||||||||||||||| ||| || | |||||||| || || |||||||| | |||   | |||||||| ||||||||||||||||| | ||| ||    
T  45977111 ctatacaatgcctaaacacgataaaagattcgaccaccaaaagtgttcaccaaatacaaagatagcctttttgactttcaaccaccacaaaaaataatac 45977012  T
Q  224 ttaactttat 233  Q
    || |||||||    
T  45977011 tttactttat 45977002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 28042996 - 28042895
Alignment:
Q  145 caaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaactttatctaataactga 244  Q
    ||||||||| |||||||||||||||  |||||||| ||||  ||| || || ||||| | |||||| ||||||||   ||| |||||||| || ||||||    
T  28042996 caaaggacttgaccaccacaaatggaaaccaaaaacaaaaacaacattgttagcttttagccaccaaaaagagtaccgctttactttatccaacaactga 28042897  T
Q  245 tc 246  Q
    ||    
T  28042896 tc 28042895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 26535522 - 26535844
Alignment:
Q  21 aacaatcaaaaatgaattataataacactgctaaatgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagagcaaag 120  Q
    |||||||||||||| |||||| ||| | ||  | ||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||   |||||    
T  26535522 aacaatcaaaaatggattatattaataatgtaagatgatatcaaaagcacaaggtgtgccaagttaccaccgcacacaacagttcacaacaaatacaaag 26535621  T
Q  121 ggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaa 220  Q
     ||||||| ||||||||||||||||| |||||||||| |||||| ||| |||||||| | ||||||| |||||||||||||||||||||||||||| |||    
T  26535622 agtctatcaaatgcctaaacacgacataggactagactaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaagaataa 26535721  T
Q  221 aacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaa 320  Q
     |||| ||||| ||||||| |||||||| |||| |||| ||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||    
T  26535722 tactttactttgtctaatagctgatctaaagataattctttttgcttaaacaatctagcatttctttcattccatgtggtccaaacgatcaaaagtcaaa 26535821  T
Q  321 gaagctgaagaaaagaccgtctt 343  Q
     ||||||||||||||||||||||    
T  26535822 taagctgaagaaaagaccgtctt 26535844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 28 - 343
Target Start/End: Original strand, 14853396 - 14853712
Alignment:
Q  28 aaaaatgaattataataacactgctaaa-tgatatcaaaagcacaagatgtgccaagataccaccgcacacaccagtttacaacaagag-caaagggtct 125  Q
    ||||||| |||||| ||||| ||| ||| |||||||   |||| ||| |||||||||| ||||||||| |||   ||| |||| ||||  ||||| ||||    
T  14853396 aaaaatggattatattaacattgcaaaagtgatatcgtcagcaaaaggtgtgccaagaaaccaccgcaaacaaaggttcacaa-aagatacaaagagtct 14853494  T
Q  126 atccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaactt 225  Q
    |||||| || ||||||||||  ||||||||||||||||| ||| |||||||| | ||||||| |||||||||||||||||||||||||||| ||| ||||    
T  14853495 atccaacgcttaaacacgacgtaggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaagaataatactt 14853594  T
Q  226 aactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaagaagc 325  Q
     ||||| |||| || |||||||| |||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||||||| | ||| |||| ||||    
T  14853595 tactttgtctagtagctgatctaaagatgactccttttgattaaataatctagcatttctttcattccatatggtccaaacggttagaagccaaataagc 14853694  T
Q  326 tgaagaaaagaccgtctt 343  Q
    ||||||||||||||||||    
T  14853695 tgaagaaaagaccgtctt 14853712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 8129538 - 8129708
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||| ||| | |||  |||||  || |||||||| |||||   ||||||  ||||||||| |||||||||||||| | |||| |    
T  8129538 ccaatgcctaaacacgacaatggattcgacacccacatctgatcaccaaacataaatacaaccttactggctttcagccaccacaaagagtgatacttta 8129637  T
Q  228 ctttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatata 298  Q
    ||||||||||||| ||| |||  ||   ||| ||||||||||| || ||   |||||||||||||||||||    
T  8129638 ctttatctaataattgaactaaggaactttctttttgcttaaaaagcctgttatttctttcattccatata 8129708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 298
Target Start/End: Original strand, 6985486 - 6985659
Alignment:
Q  125 tatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaact 224  Q
    ||||||||||||||||||||||| ||| | ||   |||||  || |||||||| |||||   ||| || ||| |||||| |||||||||||| | | |||    
T  6985486 tatccaatgcctaaacacgacaatggattcgatacccacatctgatcaccaaacataaatacaacattattgactttcagccaccacaaagaatgatact 6985585  T
Q  225 taactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatata 298  Q
    | ||||| |||||||| ||| |||  ||   ||| ||||||||||| || ||   |||||||||||||||||||    
T  6985586 ttactttgtctaataattgaactaaggaactttctttttgcttaaaaagcctgttatttctttcattccatata 6985659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 337
Target Start/End: Original strand, 3168500 - 3168706
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||| ||||||||| |||||   ||| |||||||| | |||||||| |||   | |||| ||||||||||||||||||||||| ||| | || |    
T  3168500 ccaatgcctatacacgacaatggact---ccatcacaaatgtttaccaaaaacaaagacagccttattggctttcaaccaccacaaagaataatatttta 3168596  T
Q  228 ctttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaagaagctg 327  Q
    |||| |||| ||  ||| |||  ||  ||||||| || ||||| | ||||   ||||||||||||||||    |||||| || |  || |||| ||||||    
T  3168597 ctttgtctagtagttgaactattgaacattccttctgtttaaataatctactgtttctttcattccataagacccaaacagtaaggagacaaacaagctg 3168696  T
Q  328 aagaaaagac 337  Q
    ||||||||||    
T  3168697 aagaaaagac 3168706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 25783092 - 25783199
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaac 228  Q
    ||||||||||||| ||||| ||||| | |||||||||||| |||||||| | ||||  | | ||||| || |||| ||||||||| || ||| | |||||    
T  25783092 caatgcctaaacatgacaatggactcgtccaccacaaatgatcaccaaatacaaaagtagcttttttagccttcagccaccacaatgaataatatttaac 25783191  T
Q  229 tttatcta 236  Q
    ||| ||||    
T  25783192 tttgtcta 25783199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 32072589 - 32072482
Alignment:
Q  130 aatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaa-caaacctttttggctttcaaccaccacaaagagtaaaacttaac 228  Q
    ||||||||||||||||||||| || | | |||||||||| |||||||| | ||||  |  ||||||| ||||||| |||||| || || |||||||| ||    
T  32072589 aatgcctaaacacgacaaagggcttgtctaccacaaatgatcaccaaatacaaaagtagccctttttagctttcagccaccagaaggaataaaactttac 32072490  T
Q  229 tttatcta 236  Q
    ||| ||||    
T  32072489 tttgtcta 32072482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 8440968 - 8440922
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcacc 174  Q
    ||||||||||||||||||| ||| || |||||||||||||| |||||    
T  8440968 ccaatgcctaaacacgacatagggctcgaccaccacaaatgatcacc 8440922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 32239359 - 32239580
Alignment:
Q  122 gtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaa 221  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||| | ||||||| |||||||||||||||||||||||||| | |||     
T  32239359 gtctatccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggctttcaaccaccacaaaaaataat 32239458  T
Q  222 acttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaag 321  Q
    |||| ||||| |||| || |||||||| |||| | || ||||| ||||| | ||||||||||||||||||| ||||  |||||||||||| ||||||||     
T  32239459 actttactttgtctagtagctgatctatagataactctttttgtttaaataatctagcatttctttcattctatatgatccaaacggtcagaagtcaaat 32239558  T
Q  322 aagctgaagaaaagaccgtctt 343  Q
    |||||||||||| |||||||||    
T  32239559 aagctgaagaaatgaccgtctt 32239580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 28449312 - 28449225
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    ||||||||||||||||||| || || |||||||||||||  |||||||| | |||   |  |||||||||||||||||| ||||||||    
T  28449312 caatgcctaaacacgacaatgggctcgaccaccacaaatattcaccaaatacaaagatagtctttttggctttcaaccatcacaaaga 28449225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 35836796 - 35836966
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    ||||||||||| |||||||| ||| | ||| ||||||  || |||||||| |||||   |||| |||||||||||| ||||||||  || | | | || |    
T  35836796 ccaatgcctaagcacgacaatggattcgacaaccacatctgatcaccaaacataaatacaacccttttggctttcatccaccacattgaatgatatttta 35836895  T
Q  228 ctttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatata 298  Q
    ||||||||||||| ||  |||  ||   ||||||||||||||| || ||   |||||||||||||||||||    
T  35836896 ctttatctaataattgtactatggaactttccttttgcttaaagagcctgttatttctttcattccatata 35836966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 17673675 - 17673764
Alignment:
Q  123 tctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagt 218  Q
    |||||| |||||||||||||||||     |||||||||||||  || |||||||||| |||  |  ||||||||| ||||||||||||||||||||    
T  17673675 tctatcaaatgcctaaacacgaca-----ctagaccaccacatgtgttcaccaaaaacaaagtag-cctttttggttttcaaccaccacaaagagt 17673764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 22100403 - 22100358
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcac 173  Q
    ||||||||||||||||||||||||||   |||||||||||| ||||    
T  22100403 ccaatgcctaaacacgacaaaggactcatccaccacaaatgatcac 22100358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 30510599 - 30510563
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccaca 164  Q
    ||||||||||||||  |||||||||||||||||||||    
T  30510599 ccaatgcctaaacataacaaaggactagaccaccaca 30510563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 30550939 - 30550903
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccaca 164  Q
    ||||||||||||||  |||||||||||||||||||||    
T  30550939 ccaatgcctaaacataacaaaggactagaccaccaca 30550903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 13649569 - 13649352
Alignment:
Q  122 gtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaa 221  Q
    |||||||||| |||||||||||||| |||||| |||||||||| ||| ||||||||   ||||||| |||||||||||||||||||||||||||| |||     
T  13649569 gtctatccaacgcctaaacacgacataggactcgaccaccacatatgatcaccaaatgcaaaacaagcctttttggctttcaaccaccacaaagaataat 13649470  T
Q  222 acttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaag 321  Q
    | || ||||| |||| || |||||||| |||||  || ||||| ||||| | | ||||||||||||||||||||||  |||||| ||||| ||| ||||     
T  13649469 attttactttgtctagtagctgatctatagatggctctttttgtttaaataatttagcatttctttcattccatatgatccaaatggtcataagccaaat 13649370  T
Q  322 aagctgaagaaaagaccg 339  Q
    |||||||| |||||||||    
T  13649369 aagctgaataaaagaccg 13649352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 122 - 339
Target Start/End: Original strand, 18587935 - 18588151
Alignment:
Q  122 gtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaa 221  Q
    ||||| |||| |||||||||||||| ||||||||||||||||| ||| |||||||| | ||||||| ||||||||| |||||||||||||||||| |||     
T  18587935 gtctagccaacgcctaaacacgacataggactagaccaccacatatgatcaccaaatacaaaacaagcctttttggatttcaaccaccacaaagaataat 18588034  T
Q  222 acttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagtcaaag 321  Q
    |||| ||||| |||| ||  || || | |||||| || ||||| ||||| | ||||||||||||||||||||||||  |||||||||||| |||  |||     
T  18588035 actttactttgtctagtagttgttc-atagatgactctttttgtttaaataatctagcatttctttcattccatatgatccaaacggtcagaagcgaaat 18588133  T
Q  322 aagctgaagaaaagaccg 339  Q
    ||||||||||||||||||    
T  18588134 aagctgaagaaaagaccg 18588151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 338
Target Start/End: Original strand, 3550660 - 3550881
Alignment:
Q  117 aaagggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    |||| |||||| ||||| |||||||||||||| |||| |||||||||||||| |||||||| | ||| | | ||||||||||||||||||||||||||||    
T  3550660 aaagtgtctattcaatgtctaaacacgacaaaagactcgaccaccacaaatgttcaccaaatacaaagctagcctttttggctttcaaccaccacaaaga 3550759  T
Q  217 gtaaaacttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccatatagtccaaacggtcaaaagt 316  Q
     ||| | || ||||| |||| ||  ||||||| |||  |||| || || ||||| | ||||   |||  ||||||||||| | ||||| |||| | |||     
T  3550760 ataatattttactttgtctagtagttgatctatagagtattctttctgtttaaataatctattgttttgttcattccataaaatccaagcggtaagaagc 3550859  T
Q  317 caaagaagctgaagaaaagacc 338  Q
    ||||  ||||||||||||||||    
T  3550860 caaatcagctgaagaaaagacc 3550881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 20013875 - 20013704
Alignment:
Q  123 tctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaa 222  Q
    |||||||||||||||||||||||| |||| ||||||||||||  | ||||||||||| ||||  | ||||||||||||||||||||||||| |||| | |    
T  20013875 tctatccaatgcctaaacacgacagaggattagaccaccacatgt-gtcaccaaaaacaaaa-gagcctttttggctttcaaccaccacaacgagtgata 20013778  T
Q  223 cttaactttatctaataactgatctagagatgattccttttgcttaaacagtctagcatttctttcattccata 296  Q
     || ||||| ||||| | |||  ||| |||  |||| || |  ||||| | |||||||||||||||||||||||    
T  20013777 ttttactttgtctaaaatctgcactaaagagcattctttctatttaaataatctagcatttctttcattccata 20013704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 28633806 - 28633694
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaa-caaacctttttggctttcaaccaccacaaagagtaaaactta 226  Q
    |||||||||||||||||||| |||||  |||||||||  || |||||||| |||||| || ||||||| |||||||| ||||||||| || ||| ||||     
T  28633806 ccaatgcctaaacacgacaatggactcaaccaccacatgtgatcaccaaacataaaaacacacctttt-ggctttcatccaccacaatgaataatacttt 28633708  T
Q  227 actttatctaataa 240  Q
    ||||||||||||||    
T  28633707 actttatctaataa 28633694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 7957053 - 7956990
Alignment:
Q  280 atttctttcattccatatagtccaaacggtcaaaagtcaaagaagctgaagaaaagaccgtctt 343  Q
    |||||||||||||||||| || |||||||||| ||| |||| ||||||||||||||||||||||    
T  7957053 atttctttcattccatatggttcaaacggtcagaagccaaataagctgaagaaaagaccgtctt 7956990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 7082507 - 7082604
Alignment:
Q  117 aaagggtctatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaa 214  Q
    |||| ||||||| ||||  |||||||||||||| ||| |||||||||||||| |||||||| | ||| |   ||||||| ||||||||||||||||||    
T  7082507 aaagtgtctatcaaatgtgtaaacacgacaaagtactcgaccaccacaaatgttcaccaaatacaaagctttccttttttgctttcaaccaccacaaa 7082604  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 8809853 - 8809764
Alignment:
Q  125 tatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaa 214  Q
    |||||||||  |||||| ||||||||||| |||||||||||||| |||||||| | ||| |   ||||||| ||||||||||||||||||    
T  8809853 tatccaatgtgtaaacatgacaaaggactcgaccaccacaaatgttcaccaaatacaaagctttccttttttgctttcaaccaccacaaa 8809764  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 15601911 - 15602029
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||  || || ||||||||||||||  ||||||| ||||||  |||||| |  |||||||||||| | || || ||  | || |    
T  15601911 ccaatgcctaaacacgacatggggctcgaccaccacaaatgaccaccaaacataaaaacaaccttatgtgctttcaaccactataatgaatagtatttta 15602010  T
Q  228 ctttatctaataactgatc 246  Q
    ||||||||||||| |||||    
T  15602011 ctttatctaataattgatc 15602029  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 33821020 - 33821105
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaa 213  Q
    |||||||||||||||||||| | |||  ||||||||||||| |||||||| ||||||  ||   |||||||||||| ||| |||||    
T  33821020 ccaatgcctaaacacgacaatgaactcaaccaccacaaatgatcaccaaacataaaaacaataattttggctttcatccatcacaa 33821105  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 47129242 - 47129335
Alignment:
Q  125 tatccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagt 218  Q
    |||||||||| ||||||||||| |||||||||||||||||  || |||||||||| ||||  | ||||||||||||||||||||||||||||||    
T  47129242 tatccaatgcttaaacacgacataggactagaccaccacatgtgttcaccaaaaacaaaaatagcctttttggctttcaaccaccacaaagagt 47129335  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 54684197 - 54684315
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||| ||||||  ||||| |||||||| || || |||||||| ||||||  |||||| | |||||||| |||||| || || ||| | || |    
T  54684197 ccaatgcctaaatacgacatgggactcgaccaccataattgatcaccaaacataaaaacaaccttatgggctttcatccaccataatgaataatatttta 54684296  T
Q  228 ctttatctaataactgatc 246  Q
    ||||||||||||| |||||    
T  54684297 ctttatctaataattgatc 54684315  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 43128133 - 43128045
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    |||||||||||| |||||||  |||| ||||||| || ||| |||||||| | |||   | ||||||||||||||||||||||||||||    
T  43128133 ccaatgcctaaatacgacaatagactcgaccaccgcagatgttcaccaaatacaaagacatcctttttggctttcaaccaccacaaaga 43128045  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 7098075 - 7098194
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    ||||||||||||||||||||| | ||  ||| ||||||||| |||||||| | |||   | ||||||||||||| | |||||| ||||| ||| | || |    
T  7098075 ccaatgcctaaacacgacaaatggct-taccgccacaaatgttcaccaaatacaaagagagcctttttggcttttatccaccataaagaataatatttga 7098173  T
Q  228 ctttatctaataactgatcta 248  Q
    |||  ||||||| ||||||||    
T  7098174 cttagtctaatagctgatcta 7098194  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 17874483 - 17874595
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||||||||| ||| | ||| ||||||  |  |||||||| ||||    |||| | |||||||||| ||||||||| || | | |||| |    
T  17874483 ccaatgcctaaacacgacaatggattcgacaaccacatctaatcaccaaacataagtacaaccctattggctttcagccaccacaatgaatgatacttta 17874582  T
Q  228 ctttatctaataa 240  Q
    |||||||||||||    
T  17874583 ctttatctaataa 17874595  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 19163729 - 19163617
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||| ||||| ||| | |||  |||||  || |||||||| | ||||  ||||||  | ||||||| |||||||||||| | | |||| |    
T  19163729 ccaatgcctaaacaagacaatggattcgacacccacatctgatcaccaaacacaaaaacaaccttactagctttcagccaccacaaagactgatacttta 19163630  T
Q  228 ctttatctaataa 240  Q
    |||||||||||||    
T  19163629 ctttatctaataa 19163617  T

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Target: scaffold0024 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 87753 - 87666
Alignment:
Q  129 caatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaaga 216  Q
    ||||||||||||||||||| ||||| ||||||||||| || |||| ||||| |||   |||||| |||||||||||||||||||||||    
T  87753 caatgcctaaacacgacaatggactcgaccaccacaattgttcactaaaaacaaagacaaccttattggctttcaaccaccacaaaga 87666  T

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Target: scaffold0351 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 13545 - 13433
Alignment:
Q  128 ccaatgcctaaacacgacaaaggactagaccaccacaaatggtcaccaaaaataaaacaaacctttttggctttcaaccaccacaaagagtaaaacttaa 227  Q
    |||||||||||||| ||||| | | | |||  |||||  || |||||||||| |||| |||||||  | ||||||| |||||||||||| | | |||| |    
T  13545 ccaatgcctaaacaagacaatgaattcgacacccacatctgatcaccaaaaacaaaaaaaaccttactagctttcagccaccacaaagactgatacttta 13446  T
Q  228 ctttatctaataa 240  Q
    |||||||||||||    
T  13445 ctttatctaataa 13433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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