View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20949_low_9 (Length: 295)

Name: NF20949_low_9
Description: NF20949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20949_low_9
NF20949_low_9
[»] chr6 (5 HSPs)
chr6 (1-287)||(10233571-10233855)
chr6 (104-179)||(20139191-20139266)
chr6 (104-179)||(22193603-22193678)
chr6 (132-206)||(31472516-31472590)
chr6 (141-178)||(31655586-31655623)
[»] scaffold0495 (1 HSPs)
scaffold0495 (3-287)||(10295-10577)
[»] chr5 (3 HSPs)
chr5 (104-179)||(74956-75031)
chr5 (132-179)||(37206090-37206137)
chr5 (132-206)||(33908153-33908227)
[»] chr4 (1 HSPs)
chr4 (104-179)||(41361235-41361310)
[»] chr1 (1 HSPs)
chr1 (141-178)||(31489558-31489595)
[»] chr2 (2 HSPs)
chr2 (132-179)||(38838099-38838146)
chr2 (127-179)||(15614210-15614262)
[»] chr7 (1 HSPs)
chr7 (104-192)||(35709870-35709958)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 10233855 - 10233571
Alignment:
Q  1 tgaatcagtatatatcaaaggcctggcacaagaagtgcaaaacaggcaaactgttacaaacnnnnnnnccccagccgcaagcacataccgcaacagtagg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||    
T  10233855 tgaatcagcatatatcaaaggcctggcacaagaagtgcaaaacaggcaaactgttacaaa-taaaaacccccagccgcaagcacataccgcaacagcagg 10233757  T
Q  101 taaagctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattgaagctcagatttttctagaac 200  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||    
T  10233756 taaagctgtcaaaacgggctaacctgtatgagccggtctgaaagctcgaataaaacatagggcttgggcttaaaaattgaagcttaaatttttctaaaac 10233657  T
Q  201 tttttataccgacctgtaaaagactgtaactcgtacgagctataggtagtctggtagcccgtgtaaagaaccattctccttcttctc 287  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  10233656 tttttataccgacctgt-aaagactgtaactcgtacgagctacgggtagtctggtagcccgtgtaaagaaccattctccttcttctc 10233571  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 20139191 - 20139266
Alignment:
Q  104 agctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    ||||||||||||||||    | ||||| ||||| || ||||| |||||||||| |||||||||||||||| |||||    
T  20139191 agctgtcaaaacgggcccgcccgtatgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattg 20139266  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 22193678 - 22193603
Alignment:
Q  104 agctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    ||||||||||||||||    | ||||| ||||| || ||||| |||||||||| |||||||||||||||| |||||    
T  22193678 agctgtcaaaacgggcccgcccgtatgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattg 22193603  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 31472590 - 31472516
Alignment:
Q  132 gccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattgaagctcagatttttctagaacttttta 206  Q
    ||||| || ||||| |||||||||| |||||||||||||||| ||||| ||| |  ||||||||||  |||||||    
T  31472590 gccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttctagggcttttta 31472516  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 31655623 - 31655586
Alignment:
Q  141 aaagctcgaataaaacatagggcttgggcctaaaaatt 178  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  31655623 aaagcccgaataaaacatagggtttgggcctaaaaatt 31655586  T

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Target: scaffold0495 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 10577 - 10295
Alignment:
Q  3 aatcagtatatatcaaaggcctggcacaagaagtgcaaaacaggcaaactgttacaaacnnnnnnnccccagccgcaagcacataccgcaacagtaggta 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||    
T  10577 aatcagcatatatcaaaggcctggcacaagaagtgcaaaacaggcaaactgttacaaa-taaaaacccccagccgcaagcacataccgcaacagcaggta 10479  T
Q  103 aagctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattgaagctcagatttttctagaactt 202  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||    
T  10478 aagctgtcaaaacgggctaacctgtatgagccggtctgaaagctcgaataaaacatagggcttgggcttaaaaattgaagcttaaatttttctaaaactt 10379  T
Q  203 tttataccgacctgtaaaagactgtaactcgtacgagctataggtagtctggtagcccgtgtaaagaaccattctccttcttctc 287  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  10378 tttataccgacctgt-aaagactgtaactcgtacgagctacgggtagtctggtagcccgtgtaaagaaccattctccttcttctc 10295  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 74956 - 75031
Alignment:
Q  104 agctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    ||||||||||||||||||  |  |||| | |||||| ||||| |||||||||| ||||||||||||||||||||||    
T  74956 agctgtcaaaacgggctagcccatatgggtcggtccgaaagcccgaataaaacgtagggcttgggcctaaaaattg 75031  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 37206137 - 37206090
Alignment:
Q  132 gccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    ||||| || ||||| |||||||||| ||||||||||||||||||||||    
T  37206137 gccggcccgaaagcccgaataaaacgtagggcttgggcctaaaaattg 37206090  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 33908227 - 33908153
Alignment:
Q  132 gccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattgaagctcagatttttctagaacttttta 206  Q
    |||||||| ||||| ||||||||||| ||||| |||||| |||||||| ||| |  ||||||||||  |||||||    
T  33908227 gccggtccgaaagcccgaataaaacacagggcctgggccgaaaaattggagcccgaatttttctagggcttttta 33908153  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 41361235 - 41361310
Alignment:
Q  104 agctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    ||||||||||||||||||  || |||| ||||| || ||||| ||||||||||  | |||||||||||||||||||    
T  41361235 agctgtcaaaacgggctagcctatatgggccggcccgaaagcccgaataaaacgcatggcttgggcctaaaaattg 41361310  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 31489595 - 31489558
Alignment:
Q  141 aaagctcgaataaaacatagggcttgggcctaaaaatt 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  31489595 aaagcccgaataaaacatagggcttgggcctaaaaatt 31489558  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 38838146 - 38838099
Alignment:
Q  132 gccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    ||||| || ||||| |||||||||| ||||||||||||||||||||||    
T  38838146 gccggcccgaaagcccgaataaaacgtagggcttgggcctaaaaattg 38838099  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 15614262 - 15614210
Alignment:
Q  127 tatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattg 179  Q
    |||| ||||| || ||||| ||||||||| ||||||||||||||||| |||||    
T  15614262 tatgggccggcccgaaagcccgaataaaatatagggcttgggcctaataattg 15614210  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 35709870 - 35709958
Alignment:
Q  104 agctgtcaaaacgggctaatctgtatgagccggtccaaaagctcgaataaaacatagggcttgggcctaaaaattgaagctcagatttt 192  Q
    ||||||||||||||| ||  |  |||| ||| | || ||||| ||||||||||  ||||||||||||||||||||| ||| || |||||    
T  35709870 agctgtcaaaacgggttaggccatatgggccagcccgaaagcccgaataaaacgcagggcttgggcctaaaaattgcagcccatatttt 35709958  T

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