View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2094_high_2 (Length: 459)
Name: NF2094_high_2
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2094_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 16963436 - 16962989
Alignment:
| Q |
19 |
ttgttgatatctcaaacaattctctggaaggaaaatttccatcttgcattgattctacgttgtcgttgaatcggacaatagtttattctggtaattgttt |
118 |
Q |
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| T |
16963436 |
ttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattgattcgacattgtcgttgaatcgaacaatagtttattctggtaattgttt |
16963337 |
T |
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| Q |
119 |
gtctgcaagatatgtcagtgatcaacattcatcttcacattgcaagaatttaacagtgttagccgctaaggcaagatttcagaagccgaaaaaatcagag |
218 |
Q |
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| T |
16963336 |
atcagcaagaaatgtcagtgatcaacattcatcttcacattgcaagaattcaacggtgttagccgctaagccgagatttgagaagccgaaaaaatcaatg |
16963237 |
T |
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| Q |
219 |
atgcaactaggagtattatttggtattattgga------------attgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcag |
306 |
Q |
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| T |
16963236 |
atgcagctaggagtattatttggtattattggaggttttgttggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcag |
16963137 |
T |
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| Q |
307 |
aaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttcatat--tagt |
404 |
Q |
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| T |
16963136 |
aaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttcatattgtagt |
16963037 |
T |
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| Q |
405 |
gcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
452 |
Q |
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| T |
16963036 |
gcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
16962989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 16216181 - 16215792
Alignment:
| Q |
19 |
ttgttgatatctcaaacaattctctggaaggaaaatttccatcttgcatt----gattctacgttgtcgttgaatcggacaatagtttattctggtaatt |
114 |
Q |
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| T |
16216181 |
ttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattaattgattcgacgttgtcggttaatcgaacaatagtttattctggtaatt |
16216082 |
T |
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| Q |
115 |
gtttgtctgcaagatatgtcagtgatcaacattcatcttcacattgcaagaatttaacagtgttagccgctaaggcaagatttcagaagccgaaaaaatc |
214 |
Q |
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| T |
16216081 |
gtttgtcagcaagaaatatcagtgatcaacattcatcttcacattgcaagaattcaacagtgttagccgctgagacgagatttgataagccgaaaaaatc |
16215982 |
T |
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| Q |
215 |
agagatgcaactaggagtattatttggtattattgg------------aattgtagggcttttgattctactctttctgttcattttgagaaagtccaaa |
302 |
Q |
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| T |
16215981 |
aatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctttctgttcattttgagaaagtctaaa |
16215882 |
T |
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| Q |
303 |
gcagaaagagaag---------------atagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataatt |
377 |
Q |
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| T |
16215881 |
gcagaaagagaagatagtaaaatagatcatagatctgttgatatttcaagagaatcaagaccaaatatttatgcaagtaaggccacaatt |
16215792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 48892080 - 48892027
Alignment:
| Q |
249 |
ggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaa |
302 |
Q |
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| T |
48892080 |
ggaattgcagggcttttgattatattttttctgttcattttgagaaagtccaaa |
48892027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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