View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2094_high_3 (Length: 367)
Name: NF2094_high_3
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2094_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 44013463 - 44013812
Alignment:
| Q |
1 |
aaatattgcagacaactgatatctatgatattaatttctaaaactgtacagcaatagccgattctactctaatctcaaagttcccacattaacaaccatc |
100 |
Q |
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| T |
44013463 |
aaatattgcagacaactgatatctatgatattaatttctaaaactgtacagcaatagccgattctactctaatctcaaagttcccacattaacaaccatc |
44013562 |
T |
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| Q |
101 |
ttgttttcatctaagaagagatgaaaatcaatcactaaccaccattacatctaattattaaaacaaagaaacaatgaaaaacaaaactcagcattgagtt |
200 |
Q |
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| T |
44013563 |
ttgttttcatctaagaagagatgaaaatcaatcactaaccaccattacatctaattattaaaacaaagaaacaatgaaaaacaaaactcagcattgagtt |
44013662 |
T |
|
| Q |
201 |
gatgactgcttgattaaaggttgagaggttttccccatctcctcatgaggctgactcttcacttccatcagtaatgcaacaacttccttcatagttggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013663 |
gatgactgcttgattaaaggttgagaggttttccccatctcctcatgaggctgactcttcacttccatcagtaatgcaacaacttccttcatagttggtc |
44013762 |
T |
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| Q |
301 |
gttcaactggcgaagaatttacacaaaacatagcgattccaagtgtttga |
350 |
Q |
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| T |
44013763 |
tttcaactggcgaagaatttacacaaaacatagcgattccaagtgtttga |
44013812 |
T |
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