View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2094_low_14 (Length: 204)
Name: NF2094_low_14
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2094_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 14173326 - 14173473
Alignment:
| Q |
45 |
gccttaacaagatcaattacttcaatcttgcttccccaacaaggtaaggatgaacttcttgtagtctcctgaaatttccttagccactgcatcctcaagg |
144 |
Q |
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| T |
14173326 |
gccttaacaagatcaattacttcaatcttgcttccccaacaaggtaaggatgaacttcttgtagtctcctgaaatttcctttgccactgcatcctcaagg |
14173425 |
T |
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| Q |
145 |
tgaacactgtttctcttgtaatacagctccttgatgtccttcatatct |
192 |
Q |
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| T |
14173426 |
tgaacactgtttctcttataatacagctctttgatgtccttcagatct |
14173473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 14151701 - 14151800
Alignment:
| Q |
88 |
gtaaggatgaacttcttgtagtctcctgaaatttccttagccactgcatcctcaaggtgaacactgtttctcttgtaatacagctccttgatgtccttca |
187 |
Q |
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| T |
14151701 |
gtaaggaggaacttcttgtagtctccagaaatttccttagccactgtatcctcaaggtgaacactatttctcttgtaatacagctctttgatgtccttca |
14151800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 5181784 - 5181658
Alignment:
| Q |
57 |
tcaattacttcaatcttgcttccccaacaaggtaaggatgaacttcttgtagtctcctgaaatttccttagccactgcatcctcaaggtgaacactgttt |
156 |
Q |
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| T |
5181784 |
tcaattactttaatcatgtttccccaaaagagtgaggatgaacttcttgtagtcccctgaggtttccttggaaacttcatcttcaagatgaacactgttt |
5181685 |
T |
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| Q |
157 |
ctcttgtaatacagctccttgatgtcc |
183 |
Q |
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| T |
5181684 |
ctcttgtagtacagctctttgatgtcc |
5181658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 5217271 - 5217217
Alignment:
| Q |
129 |
cactgcatcctcaaggtgaacactgtttctcttgtaatacagctccttgatgtcc |
183 |
Q |
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| T |
5217271 |
cactgcatcttcaagatgaacactgtttctcttgtaggacagctctttgatgtcc |
5217217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 5189700 - 5189633
Alignment:
| Q |
100 |
ttcttgtagtctcctgaaatttccttagccactgcatcctcaaggtgaacactgtttctcttgtaata |
167 |
Q |
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| T |
5189700 |
ttcttgtaatctcctgaagtttttttggccactgcatgctcaagttggacactatttctcttgtaata |
5189633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 5246399 - 5246332
Alignment:
| Q |
100 |
ttcttgtagtctcctgaaatttccttagccactgcatcctcaaggtgaacactgtttctcttgtaata |
167 |
Q |
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| T |
5246399 |
ttcttgtaatctcctgaagtttttttggccactgcatgctcaagttggacactatttctcttgtaata |
5246332 |
T |
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