View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2094_low_2 (Length: 467)
Name: NF2094_low_2
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2094_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 178 - 321
Target Start/End: Original strand, 24372203 - 24372342
Alignment:
| Q |
178 |
tttaaggttagtttggtctcttttgttttatgaaaataaaggtgtgttgcttcattaactaactatatatgaattatcacatgaatgcaaattgagactg |
277 |
Q |
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| T |
24372203 |
tttaaggttagtttggtctcttttgttttatgaaaataaaggtgtgttgcttcattaac----tatatatgaattatcacatgaatgcaaattgagactg |
24372298 |
T |
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| Q |
278 |
tctcatgagttttgtaaatttggtttcaccctccatcttttctc |
321 |
Q |
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| T |
24372299 |
tctcatgagttttgtaaatttggtttcaccctccatcttttctc |
24372342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 24372033 - 24372129
Alignment:
| Q |
6 |
gtccaagaatatagagacaaatagaaaagggagagagagtgtatagaaaaggcaaagtaccatatccaaaatgttttccaaaggatcaagaactcacct |
104 |
Q |
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| T |
24372033 |
gtccaaaaagatagagacaaatagaaaagggagagagggt--atagaaaaggcaaagtaccatatccaaaatgtttttcaaaggatcaagatctcacct |
24372129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 24372407 - 24372472
Alignment:
| Q |
386 |
cagaagtaaaacattaattagagtaaagttttaaactctattgagaaaaaatacgaggactgttgt |
451 |
Q |
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| T |
24372407 |
cagaagtaaaacattaattagagtaaagatttaaactctattgagaaaaaatacgaggattgttgt |
24372472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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