View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2094_low_5 (Length: 348)

Name: NF2094_low_5
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2094_low_5
NF2094_low_5
[»] chr5 (12 HSPs)
chr5 (19-335)||(13446985-13447301)
chr5 (19-335)||(13419434-13419750)
chr5 (19-335)||(13426325-13426641)
chr5 (22-330)||(13413092-13413400)
chr5 (22-335)||(13388997-13389310)
chr5 (19-170)||(13453938-13454089)
chr5 (19-177)||(13393562-13393720)
chr5 (22-335)||(13385176-13385489)
chr5 (224-333)||(13454143-13454252)
chr5 (23-187)||(13378976-13379140)
chr5 (22-187)||(13373179-13373344)
chr5 (262-335)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (19-190)||(47601256-47601427)
chr4 (245-333)||(47601482-47601570)
[»] chr8 (1 HSPs)
chr8 (35-187)||(28430528-28430680)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 13446985 - 13447301
Alignment:
Q  19 cataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13446985 cataccaggcttgtcgagtccaaaatgtcgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 13447084  T
Q  119 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447085 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatt 13447184  T
Q  219 tggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttt 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447185 tggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttt 13447284  T
Q  319 tactttgcttcccacct 335  Q
    |||||||||||||||||    
T  13447285 tactttgcttcccacct 13447301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 13419434 - 13419750
Alignment:
Q  19 cataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 118  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13419434 cataccaggcttgtcgagttcaaaatgtcgaagaggactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcagga 13419533  T
Q  119 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| ||||  ||    ||||    ||| ||     
T  13419534 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgactgtaaatg 13419633  T
Q  219 tggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttt 318  Q
    | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||     
T  13419634 ttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttc 13419733  T
Q  319 tactttgcttcccacct 335  Q
    |||||||||||| ||||    
T  13419734 tactttgcttccaacct 13419750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 13426325 - 13426641
Alignment:
Q  19 cataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 118  Q
    |||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13426325 cataccaggcttgtcgagttgaaaatgacgaagaggactatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcagga 13426424  T
Q  119 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatt 218  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||||||||| ||||| ||    ||||    || | ||    
T  13426425 atgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgtttgtt 13426524  T
Q  219 tggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttt 318  Q
     || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  13426525 gggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttc 13426624  T
Q  319 tactttgcttcccacct 335  Q
    |||||||||||| ||||    
T  13426625 tactttgcttccaacct 13426641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 13413092 - 13413400
Alignment:
Q  22 accaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatg 121  Q
    ||||||||| ||||||||||||  || |||||||||||| || ||||| ||||| ||||| |||||||| |||   |||||||||| | | |||||||||    
T  13413092 accaggcttatcgagtccaaaaaatcgaagaggactatatacggtgacaccagcacaaaggagaggaccagcaaattcaagaggtatgttgtcaggaatg 13413191  T
Q  122 cgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttgg 221  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||||||||| ||||  ||    ||||      | ||||||    
T  13413192 cgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaaatttgg 13413291  T
Q  222 tgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttac 321  Q
     |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || |||||||||||||||||||||||||| |  ||    
T  13413292 ggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaacttctccac 13413391  T
Q  322 tttgcttcc 330  Q
    |||||||||    
T  13413392 tttgcttcc 13413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 13389310 - 13388997
Alignment:
Q  22 accaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatg 121  Q
    |||||| || ||||||||| ||| |||||||||||| ||||| ||||  ||||| ||||| |||||  | ||| | ||||| ||||| | ||||||||||    
T  13389310 accaggtttatcgagtccataatatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatg 13389211  T
Q  122 cgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttgg 221  Q
     ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||  ||    ||||   |||| || |||    
T  13389210 tgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaaagtaaatgtgg 13389111  T
Q  222 tgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttac 321  Q
      |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| || ||||||| |||    
T  13389110 gacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctac 13389011  T
Q  322 tttgcttcccacct 335  Q
    ||||||||||||||    
T  13389010 tttgcttcccacct 13388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 13453938 - 13454089
Alignment:
Q  19 cataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 118  Q
    |||| |||||||||||||||||||||||| |||||||||||| || || |  ||||| ||||| |||||| | ||  |||||||||||||   ||| |||    
T  13453938 catatcaggcttgtcgagtccaaaatgtcgaagaggactatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctgga 13454037  T
Q  119 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 170  Q
    ||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454038 atgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 13393720 - 13393562
Alignment:
Q  19 cataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 118  Q
    |||||||||||||||||||||||||| || ||||||||||||||| || |  || || ||||| |||||| | |||   ||||| ||||||| |||||||    
T  13393720 cataccaggcttgtcgagtccaaaatatcgaagaggactatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcagga 13393621  T
Q  119 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 177  Q
    ||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393620 atgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 13385489 - 13385176
Alignment:
Q  22 accaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatg 121  Q
    |||||| |||||||||||||| | |||||||||||| ||||| ||||  ||||| ||||| |||||  | ||| | ||||| ||||| | ||||||||||    
T  13385489 accaggtttgtcgagtccaaagtatctaagaggactgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaatg 13385390  T
Q  122 cgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttgg 221  Q
     ||| ||| |||| |||  |  |||||| |||||| ||  ||||||| |  ||||| || |||||||||  | | |||   | |||   ||| |||  ||    
T  13385389 tgaaccacgaagttctcagccacaaccaatgagtcagaataacctccgtgtgtgatggttccatcacgatgcatgccaccaactgtagtagtgtatgcgg 13385290  T
Q  222 tgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttac 321  Q
     ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| |||    
T  13385289 ggcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctac 13385190  T
Q  322 tttgcttcccacct 335  Q
    ||||||||||||||    
T  13385189 tttgcttcccacct 13385176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 333
Target Start/End: Original strand, 13454143 - 13454252
Alignment:
Q  224 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 323  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  324 tgcttcccac 333  Q
    ||||||||||    
T  13454243 tgcttcccac 13454252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 13378976 - 13379140
Alignment:
Q  23 ccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgc 122  Q
    ||||| ||||| | |||||||||| | |  || |||||||||||||  ||||| ||||| |||||| ||||| ||||||| | ||||  ||| ||||| |    
T  13378976 ccaggtttgtcaaatccaaaatgtttcattgggctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatac 13379075  T
Q  123 gaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 187  Q
    | |  | |||||| |||||  ||||||| | ||| ||| | |||||||| |||||||||||||||    
T  13379076 ggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgccatca 13379140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 13373179 - 13373344
Alignment:
Q  22 accaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatg 121  Q
    |||||||||||  |||||||||| | | | ||| ||||| |||||||  || || |||||||||||| | ||  ||||||| ||||||  |||||||||     
T  13373179 accaggcttgttaagtccaaaatatttcaaagggctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaata 13373278  T
Q  122 cgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 187  Q
    || ||||| ||||| ||||  |||||||| |  || ||| | |||||||| ||||| || ||||||    
T  13373279 cggatcacgaagtgttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttccatca 13373344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 13393477 - 13393404
Alignment:
Q  262 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 335  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| ||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacct 13393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 47601256 - 47601427
Alignment:
Q  19 cataccaggcttgtcgagtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcagga 118  Q
    ||||||||| || ||||||||||||| || ||||||||||||||||||||  || || |||||||||||| | | | | ||||| || || | ||| |||    
T  47601256 cataccaggtttatcgagtccaaaatatcgaagaggactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcggga 47601355  T
Q  119 atgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 190  Q
    ||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  47601356 atgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 47601482 - 47601570
Alignment:
Q  245 gcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccac 333  Q
    |||||||||| ||| || |  |||||||| | |||| | || || || ||||||||||||||||| ||||||| |||||||||||||||    
T  47601482 gcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 187
Target Start/End: Complemental strand, 28430680 - 28430528
Alignment:
Q  35 agtccaaaatgtctaagaggactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagt 134  Q
    |||||||||| | | | ||| |||||||| ||||  || ||||| || |||||| | ||| |||||||||||| |||||  |||||||  |||||||||     
T  28430680 agtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagc 28430581  T
Q  135 gctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 187  Q
      ||||| |  ||||||| ||||||| | |||||||| ||||| |||||||||    
T  28430580 tttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatca 28430528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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