View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2094_low_6 (Length: 317)
Name: NF2094_low_6
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2094_low_6 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 20134604 - 20134318
Alignment:
| Q |
21 |
gccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgattttcat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20134604 |
gccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgatcttcat |
20134505 |
T |
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| Q |
121 |
accaaaatagttattctattttcttgttcttattttaaatttgattggcttgatatagccggtggaacaatttaaatgattcctactcacagtcttgtat |
220 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20134504 |
accaaagtagttattctattttcttgttcttattttaaatttgattggcttgacacagccggtggaacaatttaaatgattcctactcacagtcttgtat |
20134405 |
T |
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| Q |
221 |
gtatggattttgttatgtaaattgataattgaaaatgagtttctatgtgaagttacacctctttaccttcttaaattgatatctgtg |
307 |
Q |
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|||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20134404 |
gtatggattttgttatgtaaattgatgattaaaaattagtttctatgtgaagttacacctctttaccttcttaaattgatatctgtg |
20134318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 44357467 - 44357753
Alignment:
| Q |
21 |
gccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgattttcat |
120 |
Q |
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| T |
44357467 |
gccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgatcttcat |
44357566 |
T |
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| Q |
121 |
accaaaatagttattctattttcttgttcttattttaaatttgattggcttgatatagccggtggaacaatttaaatgattcctactcacagtcttgtat |
220 |
Q |
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| T |
44357567 |
accaaagtagttattctattttcttgttcttattttaaatttgattggcttgacacagccggtggaacaatttaaatgattcctactcacagtcttgtat |
44357666 |
T |
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| Q |
221 |
gtatggattttgttatgtaaattgataattgaaaatgagtttctatgtgaagttacacctctttaccttcttaaattgatatctgtg |
307 |
Q |
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| T |
44357667 |
gtatggattttgttatgtaaattgatgattaaaaattagtttctatgtgaagttacacctctttaccttcttaaattgatatctgtg |
44357753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 46984 - 47272
Alignment:
| Q |
21 |
gccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgattttcat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |
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| T |
46984 |
gccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaagaatacttaagaatagatgattcgatttttat |
47083 |
T |
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| Q |
121 |
accaaaatagttattctattttcttg--ttcttattttaaatttgattggcttgatatagccggtggaacaatttaaatgattcctactcacagtcttgt |
218 |
Q |
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|||||||||||||||||||||||||| || | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47084 |
accaaaatagttattctattttcttgggttaatgttttaaatttgattagcttgatgtagccgggggaacaatttaaatgattcctactcacagtcttgt |
47183 |
T |
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| Q |
219 |
atgtatggattttgttatgtaaattgataattgaaaatgagtttctatgtgaagttacacctctttaccttcttaaattgatatctgtg |
307 |
Q |
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| T |
47184 |
atgtatggattttgttatgtaaattgataattaaaaattagtttctatgtgaagttacacctctttaccttcttaaattgatatctgtg |
47272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 11203072 - 11203351
Alignment:
| Q |
23 |
cggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgattttcatac |
122 |
Q |
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||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
11203072 |
cggtgctattagtccttgcaacaactgatgttgttatcttaatgatatctccaattctgtttacagggatatttaagaatagatgattcgattttcacac |
11203171 |
T |
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| Q |
123 |
caaaatagttattctattttcttgttcttattttaaatttgattggcttgatatagccggtggaacaatttaaatgattcctactcacagtcttgtatgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11203172 |
caaaatagttattctattttcttgttcttattttaaatttgattggcttgatgtagccggtggaacaatttaaatgattcctactcacaaccttgtatgt |
11203271 |
T |
|
| Q |
223 |
atggattttgttatgtaaattgataattgaaaatgagtttctatgtgaagttacacctctttaccttcttaaattgatatct |
304 |
Q |
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|||||||||| |||||||| |||||||| ||||| |||||||| ||||||| ||||| |||||||||||||||||||||| |
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| T |
11203272 |
atggattttgctatgtaaactgataattaaaaattggtttctatatgaagtt--acctccttaccttcttaaattgatatct |
11203351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 4431696 - 4431557
Alignment:
| Q |
25 |
gtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatatttaagaatagatgattcgattttc------ |
118 |
Q |
| |
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||||||||| | |||||| ||||||||| | | || |||||||| |||| ||||||||||| ||||||||||||| ||||||||| |||||| |
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| T |
4431696 |
gtgctattagttcttgcagcaactgattatgtaattttaatgatgtctcaaattctgtttatgggaatatttaagataagatgattctattttcatttat |
4431597 |
T |
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| Q |
119 |
ataccaaaatagttattctattttcttgttcttattttaa |
158 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
4431596 |
ataccaaaatagttattctattttctagttcttattttaa |
4431557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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