View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2094_low_9 (Length: 254)
Name: NF2094_low_9
Description: NF2094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2094_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 13614819 - 13614594
Alignment:
| Q |
16 |
cagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaa |
115 |
Q |
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| T |
13614819 |
cagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaa |
13614720 |
T |
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| Q |
116 |
agtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatcatcaagcatcttcaaattttctacttgcctttg |
215 |
Q |
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| T |
13614719 |
agtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatcatcaagcatcttcaaattttctacttgcctttg |
13614620 |
T |
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| Q |
216 |
tctctttaacaacttattattaagta |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13614619 |
tctctttaacaacttattattaagta |
13614594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 31247049 - 31246827
Alignment:
| Q |
16 |
cagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaa |
115 |
Q |
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|||||||||| ||||||| |||||| | |||| | | |||||| ||||||||||||||||||| |||||||| || |||||||||| |||||| || |
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| T |
31247049 |
cagaaacttaggtcaagatattgcagacatgacagacaagacaacgaaggcaacaataaaccaaccgaatcttcgcgttttcgaaaaaaagaaaatggaa |
31246950 |
T |
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| Q |
116 |
agtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatcatcaagcatcttcaaattttctacttgcctttg |
215 |
Q |
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| T |
31246949 |
agtgcggctttagaactttgtagatgaaggatgttggttggtattgagtagtacattct---ttaatatcaagcatctccaaatgttcattttgcctttg |
31246853 |
T |
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| Q |
216 |
tctctttaacaacttattattaagta |
241 |
Q |
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||||| ||||| |||||||||||||| |
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| T |
31246852 |
tctctctaacatcttattattaagta |
31246827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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