View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20950_high_1 (Length: 658)

Name: NF20950_high_1
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20950_high_1
NF20950_high_1
[»] chr3 (16 HSPs)
chr3 (12-643)||(1744332-1744974)
chr3 (12-205)||(1722223-1722425)
chr3 (536-640)||(53589332-53589437)
chr3 (536-637)||(15987358-15987459)
chr3 (536-640)||(25466261-25466365)
chr3 (536-640)||(44451095-44451198)
chr3 (536-643)||(12144781-12144888)
chr3 (549-640)||(45280171-45280262)
chr3 (536-640)||(25320975-25321086)
chr3 (569-645)||(1085530-1085606)
chr3 (536-640)||(4022949-4023053)
chr3 (552-640)||(48895840-48895928)
chr3 (601-640)||(17439363-17439402)
chr3 (575-640)||(52496431-52496496)
chr3 (548-628)||(7536349-7536428)
chr3 (551-636)||(14132310-14132395)
[»] chr7 (10 HSPs)
chr7 (533-640)||(28036947-28037054)
chr7 (571-645)||(4587735-4587809)
chr7 (536-640)||(12468706-12468811)
chr7 (536-640)||(11994146-11994249)
chr7 (548-633)||(4979056-4979141)
chr7 (597-640)||(15682684-15682727)
chr7 (314-391)||(31821952-31822029)
chr7 (569-645)||(14628989-14629065)
chr7 (536-631)||(7948215-7948310)
chr7 (551-604)||(41131724-41131777)
[»] chr2 (9 HSPs)
chr2 (536-640)||(20515763-20515867)
chr2 (533-640)||(13370157-13370264)
chr2 (548-636)||(15438260-15438349)
chr2 (551-640)||(17162217-17162306)
chr2 (569-640)||(19011877-19011948)
chr2 (546-612)||(23388924-23388990)
chr2 (579-637)||(25473275-25473335)
chr2 (546-633)||(21498324-21498411)
chr2 (579-640)||(31000116-31000177)
[»] scaffold0003 (1 HSPs)
scaffold0003 (536-640)||(89551-89655)
[»] chr1 (6 HSPs)
chr1 (536-639)||(33379562-33379665)
chr1 (536-640)||(44787558-44787662)
chr1 (536-636)||(16083441-16083541)
chr1 (536-643)||(22785292-22785399)
chr1 (548-620)||(25018444-25018516)
chr1 (551-603)||(33102842-33102894)
[»] chr5 (9 HSPs)
chr5 (546-640)||(28619461-28619555)
chr5 (544-640)||(9422899-9422994)
chr5 (536-637)||(10235833-10235934)
chr5 (555-640)||(22987533-22987618)
chr5 (568-640)||(21166396-21166468)
chr5 (597-645)||(22849430-22849478)
chr5 (568-634)||(39838751-39838818)
chr5 (547-640)||(24364384-24364479)
chr5 (598-640)||(21171017-21171059)
[»] chr4 (9 HSPs)
chr4 (536-632)||(43851318-43851414)
chr4 (594-643)||(6244140-6244189)
chr4 (546-636)||(16288528-16288618)
chr4 (594-638)||(24476144-24476188)
chr4 (594-646)||(21823493-21823546)
chr4 (594-640)||(14540402-14540448)
chr4 (568-634)||(49300438-49300504)
chr4 (553-626)||(12567928-12568001)
chr4 (548-633)||(26654333-26654418)
[»] chr8 (10 HSPs)
chr8 (345-469)||(23577755-23577878)
chr8 (546-633)||(18847222-18847309)
chr8 (575-640)||(28862685-28862750)
chr8 (552-636)||(19709705-19709789)
chr8 (580-640)||(22455323-22455383)
chr8 (548-640)||(15341129-15341221)
chr8 (548-640)||(15430194-15430286)
chr8 (548-640)||(15521498-15521590)
chr8 (594-644)||(27662058-27662108)
chr8 (536-640)||(41652217-41652318)
[»] chr6 (13 HSPs)
chr6 (548-640)||(24154375-24154467)
chr6 (536-640)||(34992141-34992244)
chr6 (546-640)||(10163469-10163563)
chr6 (548-620)||(13003058-13003130)
chr6 (569-639)||(16434168-16434238)
chr6 (548-636)||(1469472-1469560)
chr6 (537-640)||(6038750-6038854)
chr6 (580-640)||(28712205-28712265)
chr6 (594-640)||(23073131-23073177)
chr6 (579-645)||(24203701-24203766)
chr6 (588-645)||(3634271-3634328)
chr6 (569-632)||(22259443-22259506)
chr6 (583-640)||(242251-242308)
[»] scaffold0167 (1 HSPs)
scaffold0167 (548-631)||(731-814)
[»] scaffold0024 (1 HSPs)
scaffold0024 (548-603)||(39168-39223)


Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 12 - 643
Target Start/End: Original strand, 1744332 - 1744974
Alignment:
Q  12 atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1744332 atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagc 1744431  T
Q  112 ctctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggatgcctaca 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  1744432 ctctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattgtcttattcttatttcctagtgtcaagatggatgcctact 1744531  T
Q  212 aaaaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttaaaaagtataatttta--gtgtctt 309  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| |    
T  1744532 aacaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttagaaagtataattttagtgtgtcct 1744631  T
Q  310 atgaaccctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatccttgtttttgtg 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1744632 atgaaccctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtg 1744731  T
Q  410 ttcatgatgttttgccatatatgtattactggcattgttctccaatgcagggtatgccatcattca---------gaacatcttgaaatctaaatatgac 500  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  1744732 ttcatgatgtgttgccatatatgtattactgccattgttctccaatgcagggtatgccatcattcacgatttcaggaacatcttgaaatctaaatatgac 1744831  T
Q  501 tttaatttgcgacgtaccatattatttactggtgttaaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgt 600  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1744832 tttaatttgcgacgtaccatattatttaccagtgttaaacaataggactagttttgattattacaaataggattaaattagaaatcttaggatatgttgt 1744931  T
Q  601 gcaatcttttttcagaaaatgtatgaatgttcatcatatttat 643  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  1744932 gcaatcttttttcaaaaaatgtatgaatgttcatcatatttat 1744974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 1722223 - 1722425
Alignment:
Q  12 atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatca--------ccaagggcacta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |        ||||||||||||    
T  1722223 atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatccttagttggctataaaacgagtaccaagggcacta 1722322  T
Q  104 tttatagcctctgatgaagctttaaaatattgatcaataata-tttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatgg 202  Q
    | |||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||||    
T  1722323 tatatagcctttgatgatgctttaaaatattgatcaataataatttttaaattaatgttgctccacattctcttcttcctatttcctaatctcaagatgg 1722422  T
Q  203 atg 205  Q
    |||    
T  1722423 atg 1722425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 53589437 - 53589332
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatctt-ttttcagaaaatgtatgaatgttcat 634  Q
    |||| |||| ||||||||||||||||||||| |||||| |||  ||||||| ||||| || |||||||||||| ||||||||||||  ||||||||||||    
T  53589437 taaataataggactagttttgattattacaagtaggatcaaaccagaaatcctaggacattttgtgcaatctttttttcagaaaatacatgaatgttcat 53589338  T
Q  635 catatt 640  Q
    ||||||    
T  53589337 catatt 53589332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 637
Target Start/End: Original strand, 15987358 - 15987459
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| | || |||||||| ||||||||| |||||| ||| |||||||  ||||| |||||||||||||||||| || ||||| ||||||||||||||    
T  15987358 taaacaacaagattagttttggttattacaagtaggatcaaactagaaattctaggacatgttgtgcaatctttttccataaaatatatgaatgttcatc 15987457  T
Q  636 at 637  Q
    ||    
T  15987458 at 15987459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 640
Target Start/End: Original strand, 25466261 - 25466365
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    |||| ||||||||||||||||||||||||||  ||||| ||| |  ||||| ||||| ||||| |||||||||||   ||||||| ||||||||||||||    
T  25466261 taaataatatgactagttttgattattacaagcaggatcaaactgaaaatcctaggacatgttttgcaatcttttcctagaaaatatatgaatgttcatc 25466360  T
Q  636 atatt 640  Q
    |||||    
T  25466361 atatt 25466365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 44451198 - 44451095
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| |||||||||||||||||||||||  | ||| |||| ||||||| ||||| || ||||||||||||||| || |||||  |||||||||||||    
T  44451198 taaacaacatgactagttttgattattacaagcaagatcaaatcagaaatcctagga-atattgtgcaatctttttccataaaatacatgaatgttcatc 44451100  T
Q  636 atatt 640  Q
    |||||    
T  44451099 atatt 44451095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 643
Target Start/End: Original strand, 12144781 - 12144888
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||| | || |||||| ||||||||| ||||||||||  ||||||| || || |||||  |||||||||||| ||||| ||| ||||||||||||    
T  12144781 taaacaataaggctggttttggttattacaagtaggattaaaccagaaatcctacgacatgttaggcaatcttttttaagaaagtgtttgaatgttcatc 12144880  T
Q  636 atatttat 643  Q
    ||||||||    
T  12144881 atatttat 12144888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 549 - 640
Target Start/End: Complemental strand, 45280262 - 45280171
Alignment:
Q  549 tagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||||||||||  | ||| ||  |||||||| |||||||||||||||||||||||| |||||||| |||  ||||||||||||||    
T  45280262 tagttttgattattacaagaacgatcaacctagaaatcgtaggatatgttgtgcaatctttttccagaaaatatatatatgttcatcatatt 45280171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 536 - 640
Target Start/End: Original strand, 25320975 - 25321086
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatctttt-------ttcagaaaatgtatgaat 628  Q
    |||||||||||||||||||||||||||||||  | | | |||  | ||||| ||||| |||||||||||||||||       |||| |||||||||||||    
T  25320975 taaacaatatgactagttttgattattacaagcatggtcaaaccaaaaatcgtaggacatgttgtgcaatcttttttttttcttcaaaaaatgtatgaat 25321074  T
Q  629 gttcatcatatt 640  Q
    ||||||||||||    
T  25321075 gttcatcatatt 25321086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 569 - 645
Target Start/End: Original strand, 1085530 - 1085606
Alignment:
Q  569 aggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatga 645  Q
    ||||| ||| |||||||| ||||| ||||||||||||  ||||  ||||||| ||||||||||||||||||||||||    
T  1085530 aggatcaaactagaaatcctaggacatgttgtgcaatgattttctagaaaatatatgaatgttcatcatatttatga 1085606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 4023053 - 4022949
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||  ||||| || ||||||||||||  ||||| |||  |||| ||||| || ||||||||||||||||||  | |||||  |||||||||||||    
T  4023053 taaacaatgggactatttatgattattacaagcaggatcaaaccagaattcttatgacatgttgtgcaatctttttctaaaaaatacatgaatgttcatc 4022954  T
Q  636 atatt 640  Q
    |||||    
T  4022953 atatt 4022949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 640
Target Start/End: Original strand, 48895840 - 48895928
Alignment:
Q  552 ttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||| ||||||||||  ||||| ||| ||||||| |||||| ||| |||||||||||||| || ||||||| ||| |||| ||||||||    
T  48895840 tttttattattacaagcaggatcaaactagaaattttaggacatgatgtgcaatctttttccaaaaaatgtgtgagtgtttatcatatt 48895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 601 - 640
Target Start/End: Complemental strand, 17439402 - 17439363
Alignment:
Q  601 gcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  17439402 gcaatcttttttcagaaattgtatgaatgttcatcatatt 17439363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 640
Target Start/End: Original strand, 52496431 - 52496496
Alignment:
Q  575 aaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||| |||| ||||| |||||||||||||||||||| ||||||| | ||||| || ||||||||    
T  52496431 aaattaaaaattttagggtatgttgtgcaatctttttttagaaaatatttgaatatttatcatatt 52496496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 628
Target Start/End: Complemental strand, 7536428 - 7536349
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaat 628  Q
    |||| |||||||||||| | |||||| ||| ||||||||| | || ||||| ||||||||||||  |||||||||||||||    
T  7536428 ctagctttgattattacgagtaggatcaaactagaaatct-atgacatgttctgcaatctttttctagaaaatgtatgaat 7536349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 14132395 - 14132310
Alignment:
Q  551 gttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatca 636  Q
    |||||| |||||||||  ||||| ||| ||||||||  |||| |||||||||||| ||||| || ||| ||  |||||||||||||    
T  14132395 gttttggttattacaagcaggatcaaactagaaatccaaggacatgttgtgcaatgtttttccaaaaagtgagtgaatgttcatca 14132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 533 - 640
Target Start/End: Original strand, 28036947 - 28037054
Alignment:
Q  533 tgttaaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttc 632  Q
    |||||||||| |  |||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  28036947 tgttaaacaacaaaactagttttgattattacaagtaggatcaaatcagaaatcttaggatatgttgtgcaatctttttttagaaagtgtatgaatgttc 28037046  T
Q  633 atcatatt 640  Q
    ||||||||    
T  28037047 atcatatt 28037054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 645
Target Start/End: Original strand, 4587735 - 4587809
Alignment:
Q  571 gattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatga 645  Q
    ||||||| |||||||| ||| | ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  4587735 gattaaactagaaatcgtagcacatgttgtgcgatcttttttcagaaaatgtttgaatgttcatcatattcatga 4587809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 536 - 640
Target Start/End: Original strand, 12468706 - 12468811
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatctttttt-cagaaaatgtatgaatgttcat 634  Q
    |||||||||||||||||||||||||||||||  | | | ||   ||||||| ||||| ||||| ||||||||||||| || ||||| |||||||||||||    
T  12468706 taaacaatatgactagttttgattattacaagcatggtcaatccagaaatcctaggacatgttatgcaatcttttttccataaaatatatgaatgttcat 12468805  T
Q  635 catatt 640  Q
    ||||||    
T  12468806 catatt 12468811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 11994249 - 11994146
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| |||||||||||| ||||||||||  ||||| |||| ||||||| ||||| || ||||||||| ||||| || |||||  |||||||||||||    
T  11994249 taaacaacatgactagtttttattattacaagcaggatcaaatcagaaatcctagga-atattgtgcaatatttttccataaaatacatgaatgttcatc 11994151  T
Q  636 atatt 640  Q
    |||||    
T  11994150 atatt 11994146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 4979141 - 4979056
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttca 633  Q
    |||| ||||||||||| ||  |||||  |||||||||| | |||| ||||||||||||||||||  ||||||||||||||||||||    
T  4979141 ctagctttgattattagaagcaggatcgaattagaaatttcaggacatgttgtgcaatctttttctagaaaatgtatgaatgttca 4979056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 597 - 640
Target Start/End: Original strand, 15682684 - 15682727
Alignment:
Q  597 ttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  15682684 ttgtgcaatctttttccagaaaatgtttgaatgttcatcatatt 15682727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 31822029 - 31821952
Alignment:
Q  314 accctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagactttt 391  Q
    |||||||||||| || |||||||  ||| | ||||||||||| |||| | |||||||  |||||||||||||||||||    
T  31822029 accctttgttgtctcatcttcaattatcctatcaaagatatttgaattcacacattggtgaatcaagaatagactttt 31821952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 645
Target Start/End: Complemental strand, 14629065 - 14628989
Alignment:
Q  569 aggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatga 645  Q
    ||||||||| |||||||  ||||| || ||||||||  ||||| |  ||||||||||||||||||||||||| ||||    
T  14629065 aggattaaactagaaattctaggacatattgtgcaaggtttttcctcaaaatgtatgaatgttcatcatattcatga 14628989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 631
Target Start/End: Complemental strand, 7948310 - 7948215
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgtt 631  Q
    ||||||||| ||||||| |||||||||||||| ||||| |||  | ||||| ||||| | |  ||||||||||||| || |||||  |||||||||    
T  7948310 taaacaataggactagtcttgattattacaaacaggatcaaaccataaatcctaggacacggcgtgcaatctttttccataaaatacatgaatgtt 7948215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 41131724 - 41131777
Alignment:
Q  551 gttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaa 604  Q
    ||||||||||||||||  | ||| |||||||||||  |||||||||||||||||    
T  41131724 gttttgattattacaagcacgatcaaattagaaattctaggatatgttgtgcaa 41131777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 20515867 - 20515763
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||| |||||||||||||||||||||  ||||| |||  ||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||    
T  20515867 taaacaataagactagttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgtaatctttttccagaaagtgtatgaatgttcatc 20515768  T
Q  636 atatt 640  Q
    |||||    
T  20515767 atatt 20515763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 533 - 640
Target Start/End: Original strand, 13370157 - 13370264
Alignment:
Q  533 tgttaaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttc 632  Q
    ||||||||||||  |||| |||| ||||||||||  ||||| |||| ||||||  ||| | |||||||||||||||||| || ||||| | |||||||||    
T  13370157 tgttaaacaataatactaattttaattattacaagcaggatcaaatcagaaattctagaacatgttgtgcaatctttttccaaaaaatatgtgaatgttc 13370256  T
Q  633 atcatatt 640  Q
    ||||||||    
T  13370257 atcatatt 13370264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 15438349 - 15438260
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaa-tcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatca 636  Q
    |||| ||||||||| ||||  ||||| ||| |||||| || || || |||||||||||||||||||||||||||||||||||||| ||||    
T  15438349 ctagctttgattatcacaagcaggataaaactagaaaatcatatgacatgttgtgcaatcttttttcagaaaatgtatgaatgttaatca 15438260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 640
Target Start/End: Complemental strand, 17162306 - 17162217
Alignment:
Q  551 gttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||||||||  ||||| |||  ||||||| || || |||||||||||||||||| || |||||  ||||||||||||||||||    
T  17162306 gttttgattattacaagcaggatcaaaccagaaatcctatgacatgttgtgcaatctttttccataaaatacatgaatgttcatcatatt 17162217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 640
Target Start/End: Original strand, 19011877 - 19011948
Alignment:
Q  569 aggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||| |||||||||||| ||||| || ||||||||| ||||| |||||| ||| |||||||||||||||||    
T  19011877 aggatcaaattagaaatcctaggacatattgtgcaatatttttccagaaattgtttgaatgttcatcatatt 19011948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 612
Target Start/End: Original strand, 23388924 - 23388990
Alignment:
Q  546 gactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatctttttt 612  Q
    |||||||||||||||||||||  | ||| |||  ||||||| ||||| |||||||||||||||||||    
T  23388924 gactagttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgcaatctttttt 23388990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 25473275 - 25473335
Alignment:
Q  579 tagaaatcttaggatatgttgtgcaatctttt--ttcagaaaatgtatgaatgttcatcat 637  Q
    |||||||| ||||| |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  25473275 tagaaatcctaggacatgttgtgcaatgttttttttcagaaaatgtttgaatgttcatcat 25473335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 633
Target Start/End: Complemental strand, 21498411 - 21498324
Alignment:
Q  546 gactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttca 633  Q
    |||||| ||||||||||||||  | | | ||| |||||||| || ||||||||||||||| || ||  ||||| ||||||||||||||    
T  21498411 gactagctttgattattacaagcacggtcaaactagaaatcctatgatatgttgtgcaatgttattctagaaagtgtatgaatgttca 21498324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 640
Target Start/End: Complemental strand, 31000177 - 31000116
Alignment:
Q  579 tagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||| ||||  |||||||||| | ||||| |||||||||  |||||||||||||||||    
T  31000177 tagaaatcctagggcatgttgtgcagtatttttccagaaaatggttgaatgttcatcatatt 31000116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 536 - 640
Target Start/End: Original strand, 89551 - 89655
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||| |||||||||||||||||||||  |||||||||  ||||||| ||||| || ||| ||||||||||| || ||||| ||||||||||||||    
T  89551 taaacaataagactagttttgattattacaaggaggattaaagcagaaatcctaggacatattgcgcaatctttttccataaaatatatgaatgttcatc 89650  T
Q  636 atatt 640  Q
    |||||    
T  89651 atatt 89655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 639
Target Start/End: Complemental strand, 33379665 - 33379562
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| | || ||||||||||||||||||  ||||  |||| ||||||||||||| || |||||||||||||||||| ||| | ||||||||||||||    
T  33379665 taaacaacaagattagttttgattattacaagcaggaccaaatcagaaatcttaggacatattgtgcaatcttttttcataaagtatatgaatgttcatc 33379566  T
Q  636 atat 639  Q
    ||||    
T  33379565 atat 33379562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 44787662 - 44787558
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| | ||||||||||||||||||||| |||||| |||  | ||||| || || |||||||||||||||||||||  |||  ||||||||||||||    
T  44787662 taaacaacaagactagttttgattattacaactaggatcaaaccataaatcatatgacatgttgtgcaatcttttttcaagaaagatatgaatgttcatc 44787563  T
Q  636 atatt 640  Q
    |||||    
T  44787562 atatt 44787558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 636
Target Start/End: Original strand, 16083441 - 16083541
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| | |||||||||||||||||||||| ||||| |||  ||||| | ||||| ||||| |||||||||||| || |||||  || ||||||||||    
T  16083441 taaacaacaagactagttttgattattacaaacaggatcaaaccagaaaccctaggacatgttatgcaatctttttccataaaatagattaatgttcatc 16083540  T
Q  636 a 636  Q
    |    
T  16083541 a 16083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 643
Target Start/End: Complemental strand, 22785399 - 22785292
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||| |  |||||||||||||||||| || ||| |||| ||||||  ||| | |||||||||||||  |||| | ||  ||| ||||||||||||    
T  22785399 taaacaataaggttagttttgattattacaagtaagatcaaatcagaaattctagaacatgttgtgcaatcagtttttaaaatttgtttgaatgttcatc 22785300  T
Q  636 atatttat 643  Q
    ||||||||    
T  22785299 atatttat 22785292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 620
Target Start/End: Original strand, 25018444 - 25018516
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaat 620  Q
    |||||||||||||||||||  | ||| |||  ||||||| ||||| ||||||||||||||||||  |||||||    
T  25018444 ctagttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgcaatctttttctagaaaat 25018516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 33102842 - 33102894
Alignment:
Q  551 gttttgattattacaaataggattaaattagaaatcttaggatatgttgtgca 603  Q
    ||||||||||||||||  ||||| |||  ||||||||||||| ||||||||||    
T  33102842 gttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgca 33102894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 546 - 640
Target Start/End: Complemental strand, 28619555 - 28619461
Alignment:
Q  546 gactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||||| ||||||||||  ||||| |||  ||||||| ||||| ||||||||||||| |||| |||||||||| |||||||||||||||||    
T  28619555 gactagttttaattattacaagcaggatcaaaccagaaatcataggacatgttgtgcaatccttttccagaaaatgtgtgaatgttcatcatatt 28619461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 544 - 640
Target Start/End: Original strand, 9422899 - 9422994
Alignment:
Q  544 atgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||||||||||||||||||  ||||| |||| ||||||| ||||| || ||||||||||||||| || |||||  ||||||||||||||||||    
T  9422899 atgactagttttgattattacaagcaggatcaaatcagaaatcctagga-atattgtgcaatctttttccataaaatacatgaatgttcatcatatt 9422994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 536 - 637
Target Start/End: Original strand, 10235833 - 10235934
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||| |||||||||||||||||||||  | ||| |||  ||||||  ||||| |||||||||||||||||| || |||||  |||||||||||||    
T  10235833 taaacaataagactagttttgattattacaagcatgatcaaaccagaaattctaggacatgttgtgcaatctttttccaaaaaatacatgaatgttcatc 10235932  T
Q  636 at 637  Q
    ||    
T  10235933 at 10235934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 640
Target Start/End: Original strand, 22987533 - 22987618
Alignment:
Q  555 tgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||| ||||  ||||| ||| |||||||| || || |||||||||||||||||| |||||| ||| |||||||||||||||||    
T  22987533 tgattataacaagcaggatcaaactagaaatcatatgacatgttgtgcaatctttttccagaaagtgtgtgaatgttcatcatatt 22987618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 568 - 640
Target Start/End: Complemental strand, 21166468 - 21166396
Alignment:
Q  568 taggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||| ||| |||||||  ||||| ||||||||||||  |||| ||||||||||||||||||||||||||||    
T  21166468 taggatcaaactagaaattctaggacatgttgtgcaatgattttccagaaaatgtatgaatgttcatcatatt 21166396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 597 - 645
Target Start/End: Original strand, 22849430 - 22849478
Alignment:
Q  597 ttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatga 645  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  22849430 ttgtgcaatctttttccagaaaatgtatgaatgttcatcatattcatga 22849478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 39838818 - 39838751
Alignment:
Q  568 taggattaaattagaaatcttaggatatgttgtgcaatcttttttc-agaaaatgtatgaatgttcat 634  Q
    |||||| |||||||||||||| ||| |||||||||||  | ||||| |||||||||||||||||||||    
T  39838818 taggatcaaattagaaatctttggacatgttgtgcaaagtattttcaagaaaatgtatgaatgttcat 39838751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 640
Target Start/End: Complemental strand, 24364479 - 24364384
Alignment:
Q  547 actagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttc--agaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||||||||||||  ||||| |||  || |||| ||| | ||||| ||||||||||||||  | ||||||| |||| ||||||||||||    
T  24364479 actagttttgattattacaagcaggatcaaaccaggaatcctagaacatgttctgcaatcttttttccaaaaaaatgtgtgaacgttcatcatatt 24364384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 640
Target Start/End: Complemental strand, 21171059 - 21171017
Alignment:
Q  598 tgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||  |||| ||||||||||||||||||||||||||||    
T  21171059 tgtgcaatgattttccagaaaatgtatgaatgttcatcatatt 21171017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 632
Target Start/End: Original strand, 43851318 - 43851414
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttc 632  Q
    ||||||||| |||| ||||| ||||||||||  ||||| |||| ||||||| ||||| |||||| ||||||||||||||||||||  ||||||||||    
T  43851318 taaacaataggacttgtttttattattacaagcaggataaaatcagaaatcctaggacatgttgcgcaatcttttttcagaaaatacatgaatgttc 43851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 594 - 643
Target Start/End: Complemental strand, 6244189 - 6244140
Alignment:
Q  594 atgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttat 643  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  6244189 atgttgtgcaatctttttccagaaaatgtttgaatgttcatcatatttat 6244140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 636
Target Start/End: Original strand, 16288528 - 16288618
Alignment:
Q  546 gactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatca 636  Q
    ||||||||||||||| |||||| |  ||||||  ||||| |||  || |||||||||||||||||| |||||| ||||||| |||||||||    
T  16288528 gactagttttgattaatacaaacaacattaaaccagaaaccttcagacatgttgtgcaatctttttccagaaagtgtatgattgttcatca 16288618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 638
Target Start/End: Original strand, 24476144 - 24476188
Alignment:
Q  594 atgttgtgcaatcttttttcagaaaatgtatgaatgttcatcata 638  Q
    |||||||||||||||||| |||||||||| |||||||||||||||    
T  24476144 atgttgtgcaatctttttccagaaaatgtttgaatgttcatcata 24476188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 646
Target Start/End: Original strand, 21823493 - 21823546
Alignment:
Q  594 atgttgtgcaatctttt-ttcagaaaatgtatgaatgttcatcatatttatgat 646  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||| |||||    
T  21823493 atgttgtgcaatctttttttcagaaaatggttgaatgttcatcatattcatgat 21823546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 14540402 - 14540448
Alignment:
Q  594 atgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||||||||||||| ||||| | || |||||||||||||||||    
T  14540402 atgttgtgcaatctttttccagaagaggtttgaatgttcatcatatt 14540448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 49300504 - 49300438
Alignment:
Q  568 taggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcat 634  Q
    |||||| ||| |||||||||||| |  | |||||||||  ||||||||||||||| |||||||||||    
T  49300504 taggatcaaactagaaatcttagaacttattgtgcaattgtttttcagaaaatgtttgaatgttcat 49300438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 626
Target Start/End: Original strand, 12567928 - 12568001
Alignment:
Q  553 tttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatga 626  Q
    |||| ||||||||||| |||| ||| |||||||   | || ||||||| |||||||||| ||||||||||||||    
T  12567928 tttgcttattacaaatgggatcaaactagaaataccaagacatgttgtacaatctttttccagaaaatgtatga 12568001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 26654418 - 26654333
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttca 633  Q
    |||| |||| |||||||||  | ||| ||| ||||||||  | || |||||||||||  ||||| |||||||||||||||||||||    
T  26654418 ctagctttgtttattacaagcatgatcaaactagaaatcccatgacatgttgtgcaaagtttttccagaaaatgtatgaatgttca 26654333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 23577878 - 23577755
Alignment:
Q  345 tcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatccttgtttttgtgttcatgatgttttgccatatatgtattactggcat 444  Q
    |||||||||||| ||| | |||||||| ||||||||||||||| ||||  ||| || || ||||||||||||||| ||||||| | || || | |  |||    
T  23577878 tcaaagatattcaaatccacacattgatgaatcaagaatagacctttccaatctttcttcttgtgttcatgatgtgttgccatttgtgcatcagtaacat 23577779  T
Q  445 tgttctccaatgcagggtatgccat 469  Q
    |||||||||||||| ||||||||||    
T  23577778 tgttctccaatgca-ggtatgccat 23577755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 633
Target Start/End: Original strand, 18847222 - 18847309
Alignment:
Q  546 gactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttca 633  Q
    |||||||||||||||||||||  ||||| ||| |||||||| || || |||||||||||||||||| || |||||  |||||||||||    
T  18847222 gactagttttgattattacaagaaggatcaaactagaaatcctatgacatgttgtgcaatctttttccaaaaaatacatgaatgttca 18847309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 640
Target Start/End: Complemental strand, 28862750 - 28862685
Alignment:
Q  575 aaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||||||| ||||  ||||||||||||| ||||||| |||||  ||||||||||||||||||    
T  28862750 aaattagaaatcctagggcatgttgtgcaatcgtttttcacaaaatacatgaatgttcatcatatt 28862685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 636
Target Start/End: Complemental strand, 19709789 - 19709705
Alignment:
Q  552 ttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatca 636  Q
    ||||||||||| |||  ||||| |||  | ||||| ||||| ||||||||||||||||||||||||| ||  |||||||||||||    
T  19709789 ttttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttttcagaaagtgcgtgaatgttcatca 19709705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 640
Target Start/End: Complemental strand, 22455383 - 22455323
Alignment:
Q  580 agaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||| |||||||||||||||||||||||| || ||| |  ||||||||||||||||||    
T  22455383 agaaatcctaggatatgttgtgcaatctttttccaaaaagtacatgaatgttcatcatatt 22455323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 15341221 - 15341129
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||| ||||||| |||||| |||  | ||||| || || || |||||||||| |||| ||||||||  |||| |||||||||||||    
T  15341221 ctagttttgataattacaagtaggatcaaaccaaaaatcctatgacatattgtgcaatcattttccagaaaatacatgagtgttcatcatatt 15341129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 15430286 - 15430194
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||| ||||||| |||||| |||  | ||||| || || || |||||||||| |||| ||||||||  |||| |||||||||||||    
T  15430286 ctagttttgataattacaagtaggatcaaaccaaaaatcctatgacatattgtgcaatcattttccagaaaatacatgagtgttcatcatatt 15430194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 15521590 - 15521498
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||| ||||||| |||||| |||  | ||||| || || || |||||||||| |||| ||||||||  |||| |||||||||||||    
T  15521590 ctagttttgataattacaagtaggatcaaaccaaaaatcctatgacatattgtgcaatcattttccagaaaatacatgagtgttcatcatatt 15521498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 27662058 - 27662108
Alignment:
Q  594 atgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatg 644  Q
    ||||||| |||  ||||||| |||||||||||||||||||| |||||||||    
T  27662058 atgttgtacaaagttttttctgaaaatgtatgaatgttcattatatttatg 27662108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 640
Target Start/End: Complemental strand, 41652318 - 41652217
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| | |||||||||||||||||||||  ||||| |||  ||||||| || || |  |||||||||||||||  ||||| |||  |||||||||||    
T  41652318 taaacaacaagactagttttgattattacaagcaggatcaaaccagaaatcatatgaca--ttgtgcaatctttttcaagaaagtgt-ggaatgttcatc 41652222  T
Q  636 atatt 640  Q
    |||||    
T  41652221 atatt 41652217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 24154467 - 24154375
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||||||||||| |||||| |||  | ||||| |||||  ||||||||||||||||| ||||||||  |||| |||||||||||||    
T  24154467 ctagttttgattattacaagtaggatcaaaccataaatcctaggacttgttgtgcaatctttttccagaaaattcatgagtgttcatcatatt 24154375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 536 - 640
Target Start/End: Original strand, 34992141 - 34992244
Alignment:
Q  536 taaacaatatgactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||| |||||||||||| ||||||||||  ||||| |||| ||||||| ||||| || ||||||||| ||||| || |||||  |||||||||||||    
T  34992141 taaacaacatgactagttttaattattacaagcaggatcaaatcagaaatcctagga-atattgtgcaatatttttccataaaatacatgaatgttcatc 34992239  T
Q  636 atatt 640  Q
    |||||    
T  34992240 atatt 34992244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 640
Target Start/End: Complemental strand, 10163563 - 10163469
Alignment:
Q  546 gactagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||||||||||||||||||||  ||||| |||  ||||||  || ||||||||||||||||| ||| ||||||||  |||| |||||||||||||    
T  10163563 gactagttttgattattacaagcaggatcaaaccagaaattctaagatatgttgtgcaatctgtttccagaaaattcatgagtgttcatcatatt 10163469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 620
Target Start/End: Complemental strand, 13003130 - 13003058
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaat 620  Q
    |||||||||||||||||||  || || |||  |||||||||||||  ||||||||||||||||||||||||||    
T  13003130 ctagttttgattattacaagcagaatcaaaccagaaatcttaggacctgttgtgcaatcttttttcagaaaat 13003058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 639
Target Start/End: Original strand, 16434168 - 16434238
Alignment:
Q  569 aggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatat 639  Q
    ||||||||| |||||||| || |||||||||||||||| |||| || ||||| ||||||||||||| ||||    
T  16434168 aggattaaactagaaatcatatgatatgttgtgcaatcattttacaaaaaatatatgaatgttcattatat 16434238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 636
Target Start/End: Complemental strand, 1469560 - 1469472
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatca 636  Q
    |||| ||||||||||||||  | ||| ||| |||||||||||| | || ||||| ||| |||||  |||||||||||||||||||||||    
T  1469560 ctagctttgattattacaagcatgatcaaactagaaatcttagaacatattgtgaaatgtttttgtagaaaatgtatgaatgttcatca 1469472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 640
Target Start/End: Original strand, 6038750 - 6038854
Alignment:
Q  537 aaacaatatgactagttttgatta-ttacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatc 635  Q
    ||||||||||||||||||| | || ||||    ||||| ||| |||||||| ||||  || ||||||||||||||| |||||||||  ||||||||||||    
T  6038750 aaacaatatgactagttttaaataattacttgcaggatcaaactagaaatcctagggaatattgtgcaatctttttccagaaaatgcttgaatgttcatc 6038849  T
Q  636 atatt 640  Q
    |||||    
T  6038850 atatt 6038854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 640
Target Start/End: Original strand, 28712205 - 28712265
Alignment:
Q  580 agaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||| ||||| |||||||||||||||||| || ||| ||||||||||||||| |||||    
T  28712205 agaaatcctaggacatgttgtgcaatctttttccataaagtgtatgaatgttcataatatt 28712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 23073177 - 23073131
Alignment:
Q  594 atgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||    
T  23073177 atgttgtgcaatcttttttcaaaaaatgtatagatgttcatcatatt 23073131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 579 - 645
Target Start/End: Complemental strand, 24203766 - 24203701
Alignment:
Q  579 tagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatga 645  Q
    ||||||||||||||||| |||||||||  ||||||| ||||| ||||||| ||||||||||| ||||    
T  24203766 tagaaatcttaggatatattgtgcaatgatttttcaaaaaat-tatgaatattcatcatattcatga 24203701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 3634271 - 3634328
Alignment:
Q  588 taggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatttatga 645  Q
    ||||| ||||||||||||  ||||||||||||||||||||  ||||||||||| ||||    
T  3634271 taggacatgttgtgcaatgatttttcagaaaatgtatgaacattcatcatattcatga 3634328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 22259506 - 22259443
Alignment:
Q  569 aggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttc 632  Q
    ||||| ||| |||||||| ||  | |||||||||||| |||||||||||||||| |||||||||    
T  22259506 aggatgaaactagaaatcctataacatgttgtgcaatgttttttcagaaaatgtttgaatgttc 22259443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 640
Target Start/End: Complemental strand, 242308 - 242251
Alignment:
Q  583 aatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgttcatcatatt 640  Q
    |||| ||||| |||||||||||| ||||| |||||| ||  |||||||||||||||||    
T  242308 aatcctaggacatgttgtgcaatatttttccagaaagtgcttgaatgttcatcatatt 242251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 631
Target Start/End: Complemental strand, 814 - 731
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgcaatcttttttcagaaaatgtatgaatgtt 631  Q
    |||| ||||||||||||||  | | | ||| |||||||| ||||| |||||||||||||||||| || ||||||||||||||||    
T  814 ctagctttgattattacaagcaagttcaaactagaaatcctaggacatgttgtgcaatctttttccataaaatgtatgaatgtt 731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 603
Target Start/End: Complemental strand, 39223 - 39168
Alignment:
Q  548 ctagttttgattattacaaataggattaaattagaaatcttaggatatgttgtgca 603  Q
    ||||||||| |||||||||  ||||| ||| |||||||||||||| ||||||||||    
T  39223 ctagttttggttattacaagcaggatcaaactagaaatcttaggacatgttgtgca 39168  T

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