View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_high_10 (Length: 352)
Name: NF20950_high_10
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 54033248 - 54032922
Alignment:
| Q |
9 |
gtgagtgagtgagtaggacatacacaataatacagttattatatgtataaaatattaatcatacaactatacaggtaccatcaaagtgagatttaagagt |
108 |
Q |
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| T |
54033248 |
gtgagtgagtgagtaggccatacacaataatacagttattatatgtataaaatattaatcatacaactatacaggtaccatcaaagtgagatttaagagt |
54033149 |
T |
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| Q |
109 |
atttctcatgacagtgtcttatttaatttttaaaattaagaatagtgtattattatatagtacatgaacaaaaatgcgagaaattaaaagaatagtgtat |
208 |
Q |
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| T |
54033148 |
atttctcatgacagtgtcttatttaatttttaaaattaagaatagtgtattattata--gtacatgaacaaaaatgcgagaaattaaaagaatagtgtat |
54033051 |
T |
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| Q |
209 |
taccttccaatgtataactcttcttgtaggaatatagcagataccaaagctgtgatgacagtagctagagggttgaacattacacaatacagaggacctc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54033050 |
taccttccaatgtataactcttcttgtaggaatatagcagataccaaagctgtgatgacagtagctagagggttgaacattacacaatacaggggacctc |
54032951 |
T |
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| Q |
309 |
ttcctgatatgcaccaggactgaataaag |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
54032950 |
ttcctgatatgcaccaggactgaataaag |
54032922 |
T |
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