View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_high_16 (Length: 279)
Name: NF20950_high_16
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 38548675 - 38548401
Alignment:
| Q |
1 |
aatcttgaccacatgcatttggaaaatatgtgactaactaatagtaaacattcgtagtaaagtnnnnnnnnnnct-aatagtaaactttcaagtttcaat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
38548675 |
aatcttgaccacatgcatttggaaaatatgtcactaactaatagtaaacattcgtagtaaagtaaaaaaagaaattaatagtaaactttcaagtttcaat |
38548576 |
T |
|
| Q |
100 |
cttgattacattcttttgaacaagtcaatcttgactacatgtattgttatatgattaaaatttactcctgttaggactttgggcatacatnnnnnnngca |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
38548575 |
cttgattacattcttttgaacaagtcaatcttgactacatgtatggttatatgattaaaatttactcctgttaggactttgggcatacataaaaaaagca |
38548476 |
T |
|
| Q |
200 |
cgggcgtgagtattttggatcgggatttagacgagaataatcccctcaagtgacatgagtgaatagtataatcta |
274 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38548475 |
cgggcgtgcgtattttggatcgggatttaaacgagaataatcccctcaagtgacatgagtgaatagtagaatcta |
38548401 |
T |
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