View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_high_17 (Length: 270)
Name: NF20950_high_17
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 19418645 - 19418896
Alignment:
| Q |
1 |
tagcatgtatacatgcaggtctgaattcaataattgtggtttgttattcttcttccaaatgctggtagcacgtcaagcatataattagaatttcatacta |
100 |
Q |
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| T |
19418645 |
tagcatgtatacatgcaggtctgaattcaataattgtggtttgttattcttcttccaaatgctggtagcacgtcaagcatataattagaatttcatatta |
19418744 |
T |
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| Q |
101 |
tattataacctttttaaatttcctattttagaatcccaaatgcacactaagttataagcagaaacatttaagccggcaactgannnnnnnatatgaaaat |
200 |
Q |
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| T |
19418745 |
tattataacctttttaaatttcctattttagaatcccaaatgcacactaagttataagcagaaacatttaagccggcaactgatttttttatatgaaaat |
19418844 |
T |
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| Q |
201 |
aacatgcaagttagcttgttttggcttataaaatggaagaatcatctaccat |
252 |
Q |
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| T |
19418845 |
aacatgcaagttagcttgttttggcttataaaatggaagaatcacctaccat |
19418896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 19425542 - 19425641
Alignment:
| Q |
153 |
tataagcagaaacatttaagccggcaactgannnnnnnatatgaaaataacatgcaagttagcttgttttggcttataaaatggaagaatcatctaccat |
252 |
Q |
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| T |
19425542 |
tataagcagaaacgtttaagccggcaactgatttttttatatgaatataacatgcaagttagcttgttttggcttataaaatgggagaatcatctaccat |
19425641 |
T |
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