View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_high_18 (Length: 259)
Name: NF20950_high_18
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 38548727 - 38548970
Alignment:
| Q |
16 |
atacatttcaagtccaacgttaaattcaaagcacatgtgtgttaacaaatagattagtgaccgagcctattgatttctaacgtgatatttctttgcttat |
115 |
Q |
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| T |
38548727 |
atacatttcaagtccaacgttaaattcaaagcacatgtgtgttaacaaatagattagtgaccgagcctattgatttctaacgtgatatttgtttgcttat |
38548826 |
T |
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| Q |
116 |
gatctaacttgcagattagctgcagaaaagcaacatgtgctcaactctgaaacaatgctaaatagctatccgctatcaatgattacaaaacatacattta |
215 |
Q |
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| T |
38548827 |
gatctaacttgcagattagctgcagaaaagcaacaggtgctcaactctgaaacaatgctatattctaaatagctatcaatgattacaaaacatacattta |
38548926 |
T |
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| Q |
216 |
atttaataatttgcagttctctttatcatacaaacatgtttata |
259 |
Q |
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| T |
38548927 |
atttaataatttgcagttctctttatcatacaaacatgtttata |
38548970 |
T |
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