View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20950_high_19 (Length: 223)
Name: NF20950_high_19
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3518368 - 3518149
Alignment:
| Q |
1 |
caaatacaacactttaatagttcctttaagtcgacgaactgaggtatcttcacttgcctctaagttgttccataccttcttcaccccataatctatttcg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3518368 |
caaatacaacactttgatagttcctttaagtcgacgatctgaggtatcttcacttgcctctaagttgttccataccttcttcaccccagaatctatttcg |
3518269 |
T |
|
| Q |
101 |
ttctcttgnnnnnnnnttgctctcaactagagaataacacacaagaactccataattataccattctagtgtcaccatttgtcttctactactcccatcg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3518268 |
ttctcttgaaaaaaaattgctctcaactagagaataacacacaagaactccataattataccattctagtgtcaccatttgtcttctactactcccatcg |
3518169 |
T |
|
| Q |
201 |
gtggaagactccacttcaag |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3518168 |
gtggaagactccacttcaag |
3518149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 3518127 - 3518070
Alignment:
| Q |
165 |
tctagtgtcaccatttgtcttctactactcccatcggtggaagactccacttcaagct |
222 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
3518127 |
tctagcgtcaccatttgtctcctactactcccatcagtggaagactccacctcaagct |
3518070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 3518048 - 3517993
Alignment:
| Q |
167 |
tagtgtcaccatttgtcttctactactcccatcggtggaagactccacttcaagct |
222 |
Q |
| |
|
||||||| | |||||||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
3518048 |
tagtgtcgctatttgtctcctactactcctatcggtggaagactccacctcaagct |
3517993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University