View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20950_high_3 (Length: 622)
Name: NF20950_high_3
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 28602228 - 28601880
Alignment:
| Q |
18 |
ataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttgtttcatgtcaatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28602228 |
ataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttgtttcatgtcaatga |
28602129 |
T |
|
| Q |
118 |
tgtaatggaacataactgtta----------gtatcatttgttggaaatgtcggggcttgggtgattagagtgaagtttaaaatttaaaatacatcgttc |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28602128 |
tgtaatggaacataactgttaagataaatgagtatcatttgttggaaatgtcggggcttgggtgattagagtgaagtttaaaatttaaaatacatcgttc |
28602029 |
T |
|
| Q |
208 |
aaaattataatcgtgtgt--tattatcgtgtatgagactgtgattaattcgaataagacagaagagttgtgttatgtcttgggctttgataattatttta |
305 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28602028 |
aaaattataatcgtgtgtgttattatcgtgtatgagactgtgattaattcgaataagacagaagagttgtgttatgtcttgggctttgataattatttta |
28601929 |
T |
|
| Q |
306 |
ttgtctaccgtgaatgttgcggtgacgatgtggctttgtgttggcgtaa |
354 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
28601928 |
ttgtctactgtgaatgttgcgatgacgatgtggctttgtgttggtgtaa |
28601880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 495 - 596
Target Start/End: Original strand, 28601614 - 28601716
Alignment:
| Q |
495 |
caattatcatttgtcatagctcaatctagtttcccttctactatcagattcattccaagacttttgaaccaagtgcacgggtat-ccttcatctgaatat |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
28601614 |
caattatcatttgtcatagctcaatctagtttcccttctactatcagattcattccaagacttttgaaccaagtgcacgggtatccctccatctgaatat |
28601713 |
T |
|
| Q |
594 |
caa |
596 |
Q |
| |
|
||| |
|
|
| T |
28601714 |
caa |
28601716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 28601878 - 28601838
Alignment:
| Q |
459 |
tcatgaaatttgttgagacaacattcaaaaacttctcaatt |
499 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28601878 |
tcatggaatttgttgagacaacattcaaaaacttctcaatt |
28601838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 41094384 - 41094431
Alignment:
| Q |
20 |
aaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagat |
67 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41094384 |
aaaaaacatatgaacttgtagttaaagcatcatgtttgtaaacaagat |
41094431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University