View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_high_6 (Length: 468)
Name: NF20950_high_6
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 31081557 - 31081089
Alignment:
| Q |
1 |
caatccacctacccactccaacaccacatctctaccacctatcatagttttgagtgcaataaatttgaattttgaacacaccaatataacactaaacgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31081557 |
caatccacctacccactccaacaccacatctctaccaccaatcataattttgagtgcaataaatttgaattttgaacccaccaatataacactaaacgtc |
31081458 |
T |
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| Q |
101 |
cacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaaagnnnnnnnnn |
200 |
Q |
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| T |
31081457 |
cacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaaagaaaaagaaa |
31081358 |
T |
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| Q |
201 |
ncttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaataaagaaatgtat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081357 |
acttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaataaagaaatgtat |
31081258 |
T |
|
| Q |
301 |
ttcattcccaaatttgccacaagaaaatattggccttacctaacttttatgtattttgcttacttcattataactcgttcgtcacaactgacgccattat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081257 |
ttcattcccaaatttgccacaagaaaatattggccttatctaacttttatgtattttgcttacttcattataactcgttcgtcacaactgacgccattat |
31081158 |
T |
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| Q |
401 |
ggactgtgaatatttatcatttgtcccatgcagaggagatg-gtggtgaataaattatatgcaggttca |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
31081157 |
ggactgtgaatatttatcatttgtcccatgcagaggagatgagtggtgaataaaggagatgcaggttca |
31081089 |
T |
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