View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_low_10 (Length: 388)
Name: NF20950_low_10
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 28391574 - 28391859
Alignment:
| Q |
14 |
gaatgccaggaattgaggttgatcaaattagatttgttttcaaactcgataaagacaggtatctaattatagactaaaatagtaactaaattgtccagaa |
113 |
Q |
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| T |
28391574 |
gaatgccaggaattgaggttgatcaaattagatttgttttcaaactcgataaagacaggtatctaattatagactaaaatagtaattaaattgtccagaa |
28391673 |
T |
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| Q |
114 |
taaattttgtggaaattaatgggaaatgaatggaacaggttcaagtacatggcaatatctgatacaagacaaagaaacatgccagcaatgaaagatagaa |
213 |
Q |
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| T |
28391674 |
taaattttgtggaaattaatgggaaatgaatggaacaggttcaagtacatggcaatatctgatacaagacaaagaaacatgccagcaatgaaagatagaa |
28391773 |
T |
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| Q |
214 |
acacaggtcaagtactagcttatcctgaagcagttctattaaccaacccaattaacccacaatttagaggagaggtagatacctgc |
299 |
Q |
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| T |
28391774 |
acacaggtcaagtactagcttatcctgaagcagttctattaaccaacccaattaacccacaatttagaggagaggtagatacctgc |
28391859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 129 - 291
Target Start/End: Original strand, 28384351 - 28384513
Alignment:
| Q |
129 |
ttaatgggaaatgaatggaacaggttcaagtacatggcaatatctgatacaagacaaagaaacatgccagcaatgaaagatagaaacacaggtcaagtac |
228 |
Q |
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|||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||||| |||||| ||||||| ||||||||||||||| |
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| T |
28384351 |
ttaatgagaaatcaatggcacaggttcaagtacatggcattatctaatacaaggcaaagaagcatgccaacaatgagagatagagacacaggtcaagtac |
28384450 |
T |
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| Q |
229 |
tagcttatcctgaagcagttctattaaccaacccaattaacccacaatttagaggagaggtag |
291 |
Q |
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| T |
28384451 |
ttgcttacaaagaagcagttctattaacaaaaccaattaatccacaatttagaggagaggtag |
28384513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 28411335 - 28411181
Alignment:
| Q |
137 |
aaatgaatggaacaggttcaagtacatggcaatatctgatacaagacaaagaaacatgccagcaatgaaagatagaaacacaggtcaagtactagcttat |
236 |
Q |
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|||| ||||| |||||||||| |||||||| |||| |||||||| ||||||| |||||| |||||| |||| || ||||||||||| ||||||| |
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| T |
28411335 |
aaatcaatggcacaggttcaactacatggctctatcggatacaaggcaaagaaggatgccaacaatgagagatgttaaaacaggtcaagttttagcttac |
28411236 |
T |
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| Q |
237 |
cctgaagcagttctattaaccaacccaattaacccacaatttagaggagaggtag |
291 |
Q |
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| T |
28411235 |
cctgaagcagttctattaaccaaaccacataacccacaatttacaggagaggtag |
28411181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 28391880 - 28391927
Alignment:
| Q |
324 |
ggttaaaagatcgatgcacgtacgtgaatgaatatgatatgattttga |
371 |
Q |
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| T |
28391880 |
ggttaaaagatcgatgcacgtacgtgaatgaatatgatatgattttga |
28391927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 28411625 - 28411565
Alignment:
| Q |
14 |
gaatgccaggaattgaggttgatcaaattagatttgttttcaaactcgataaagacaggta |
74 |
Q |
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||||||||| | || ||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
28411625 |
gaatgccagcagttaaggttgatcaaattagatttgttttcagactcaataaagacaggta |
28411565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 28383447 - 28383493
Alignment:
| Q |
14 |
gaatgccaggaattgaggttgatcaaattagatttgttttcaaactc |
60 |
Q |
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||||||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
28383447 |
gaatgccagcagttgaggttgatcaaattagatatgttttcaaactc |
28383493 |
T |
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