View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20950_low_12 (Length: 348)

Name: NF20950_low_12
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20950_low_12
NF20950_low_12
[»] chr2 (15 HSPs)
chr2 (103-206)||(36278253-36278357)
chr2 (271-331)||(36278422-36278482)
chr2 (150-206)||(25626578-25626634)
chr2 (150-205)||(44068782-44068837)
chr2 (148-206)||(39420191-39420249)
chr2 (150-204)||(410005-410059)
chr2 (136-206)||(14275860-14275930)
chr2 (150-206)||(2641573-2641627)
chr2 (149-205)||(20061054-20061110)
chr2 (142-206)||(32294502-32294566)
chr2 (150-206)||(39364527-39364583)
chr2 (147-206)||(9950374-9950433)
chr2 (150-180)||(27414190-27414220)
chr2 (137-199)||(37619465-37619527)
chr2 (150-206)||(1705071-1705127)
[»] chr8 (3 HSPs)
chr8 (150-206)||(6530411-6530467)
chr8 (150-206)||(15067677-15067733)
chr8 (150-190)||(35865253-35865293)
[»] chr7 (7 HSPs)
chr7 (142-206)||(32786895-32786959)
chr7 (150-205)||(26080973-26081028)
chr7 (150-205)||(26104760-26104815)
chr7 (142-206)||(45837913-45837977)
chr7 (147-201)||(26852600-26852654)
chr7 (137-182)||(25119868-25119913)
chr7 (170-206)||(31054278-31054314)
[»] chr4 (10 HSPs)
chr4 (150-206)||(29508769-29508825)
chr4 (150-206)||(30033484-30033540)
chr4 (138-205)||(24940736-24940803)
chr4 (147-205)||(27918333-27918391)
chr4 (137-186)||(21894833-21894882)
chr4 (150-190)||(22019510-22019550)
chr4 (147-182)||(27918460-27918496)
chr4 (136-204)||(28675671-28675739)
chr4 (154-206)||(36937136-36937188)
chr4 (150-206)||(50297637-50297693)
[»] chr3 (4 HSPs)
chr3 (150-206)||(39430365-39430421)
chr3 (150-206)||(47006701-47006757)
chr3 (147-205)||(28787776-28787833)
chr3 (141-203)||(45628419-45628481)
[»] chr6 (2 HSPs)
chr6 (147-205)||(30438358-30438416)
chr6 (142-188)||(7509634-7509680)
[»] chr1 (7 HSPs)
chr1 (142-205)||(16394931-16394994)
chr1 (147-195)||(31635557-31635605)
chr1 (150-206)||(41884619-41884675)
chr1 (146-189)||(51295700-51295743)
chr1 (147-188)||(43949197-43949238)
chr1 (171-203)||(1035676-1035708)
chr1 (157-205)||(26176316-26176364)
[»] chr5 (5 HSPs)
chr5 (153-206)||(29557577-29557630)
chr5 (149-200)||(40044800-40044851)
chr5 (150-206)||(554288-554344)
chr5 (149-185)||(9780705-9780741)
chr5 (150-206)||(10197098-10197154)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 36278253 - 36278357
Alignment:
Q  103 atgcatgctatatactcttaactatattattacttaaatggtcctgctaac-ttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgc 201  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||| ||||||||||||||||| ||||||| ||||||||     
T  36278253 atgcatgctatatactcttaactatattattacttaaagggtcatgttaactttgtgccctaagaacacatgttaaggaacctaaaaagagcaactttgt 36278352  T
Q  202 attgg 206  Q
    |||||    
T  36278353 attgg 36278357  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 36278422 - 36278482
Alignment:
Q  271 gagtttcttatacataattatccttatatttcataacaaatgcttattataggatatactt 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36278422 gagtttcttatacataattatccttatatttcataacaaatgcttattattggatatactt 36278482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 25626634 - 25626578
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||    
T  25626634 taacttgtgccctaagggcacatgttaaggaacctaaaatgaacaactttgaattgg 25626578  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 44068782 - 44068837
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    ||||||||||||||||| |||||||||||||| | |||| ||||||||||||||||    
T  44068782 taacttgtgccctaagggcacatgttaaggaatctaaaatgaacaactttgcattg 44068837  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 39420191 - 39420249
Alignment:
Q  148 gctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||||| | | |||||||||||||||| ||||||| ||||||||||||||    
T  39420191 gctaacttgtgcccttaaggcacatgttaaggaacctaaaaagagcaactttgcattgg 39420249  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 410059 - 410005
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcatt 204  Q
    ||||||||||||||||| |||||||||||||||| ||||  | ||||||||||||    
T  410059 taacttgtgccctaagggcacatgttaaggaacctaaaataagcaactttgcatt 410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 14275930 - 14275860
Alignment:
Q  136 ttaaatggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||| |||| ||||||||||| |||||| | ||||| ||||| |||||||||||| ||| ||||||||||    
T  14275930 ttaaagggtcatgctaacttgttccctaaaggcacatattaagcaacccaaaaagagcaattttgcattgg 14275860  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 2641627 - 2641573
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||    
T  2641627 taacttgtgccctaagg-cacatgttaaggaatc-aaaaagagcaactttgcattgg 2641573  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 20061054 - 20061110
Alignment:
Q  149 ctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    ||||||||| |||| ||| ||||||||||| |||| ||||||| |||||||||||||    
T  20061054 ctaacttgttcccttagggcacatgttaagcaacctaaaaagagcaactttgcattg 20061110  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 32294502 - 32294566
Alignment:
Q  142 ggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    |||| |||||||||||||||||| | |||||||||| ||||| ||||||| ||| ||| ||||||    
T  32294502 ggtcatgctaacttgtgccctaaaggcacatgttaaagaacctaaaaagagcaaatttacattgg 32294566  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 39364583 - 39364527
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    |||||| |||| ||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  39364583 taacttatgccataagggcacgtgttaatgaacccaaaaataacaactttgcattgg 39364527  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 9950433 - 9950374
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||  |||||| |||||||||| |||||| ||||||  |||||||||||||    
T  9950433 tgctaacttgtgttctaagggcacatgttaaagaacccgaaaagaggaactttgcattgg 9950374  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 27414220 - 27414190
Alignment:
Q  150 taacttgtgccctaaggacacatgttaagga 180  Q
    |||||||||||||||||||||||||||||||    
T  27414220 taacttgtgccctaaggacacatgttaagga 27414190  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 37619465 - 37619527
Alignment:
Q  137 taaatggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaacttt 199  Q
    |||| |||| |||||||||||||||||||| ||| | ||||  |||||||||||| |||||||    
T  37619465 taaaaggtcatgctaacttgtgccctaagggcacctcttaaacaacccaaaaagagcaacttt 37619527  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1705127 - 1705071
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||| ||| ||||||||||| |||| ||||||| ||| |||| |||||    
T  1705127 taacttgtgcccttagggcacatgttaagcaacctaaaaagagcaattttggattgg 1705071  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 6530467 - 6530411
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  6530467 taacttgtgtcctaaggacacatgttaagcaacccaaaaagagcaactttgcattgg 6530411  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 15067733 - 15067677
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||| ||| | |||||||||||||||| ||||  | ||||||||||||||    
T  15067733 taacttgtgccgtaaaggcacatgttaaggaacctaaaataagcaactttgcattgg 15067677  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 35865293 - 35865253
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaag 190  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  35865293 taacctgtgccctaaggacacatgttaaagaacctaaaaag 35865253  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 32786959 - 32786895
Alignment:
Q  142 ggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||    
T  32786959 ggtcatgctaacttgtgccctaagggcacatgttaaggaacccgaaaagagcaactttgtattgg 32786895  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 26080973 - 26081028
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||    
T  26080973 taactcgtgctctaagggcacatgttaaggaacccaaaaagaacaattttgcattg 26081028  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 26104760 - 26104815
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||    
T  26104760 taactcgtgctctaagggcacatgttaaggaacccaaaaagaacaattttgcattg 26104815  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 45837977 - 45837913
Alignment:
Q  142 ggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    |||| |||||||||||||||| ||| ||||||||||| || | ||||||| ||||||||||||||    
T  45837977 ggtcatgctaacttgtgcccttagggcacatgttaagcaatctaaaaagagcaactttgcattgg 45837913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 26852600 - 26852654
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgc 201  Q
    |||||||||||| |||||||||||||||||||||||  |||| || |||||||||    
T  26852600 tgctaacttgtgtcctaaggacacatgttaaggaactaaaaatgagcaactttgc 26852654  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 25119913 - 25119868
Alignment:
Q  137 taaatggtcctgctaacttgtgccctaaggacacatgttaaggaac 182  Q
    |||| |||| || ||||||||||||||||| |||||||||||||||    
T  25119913 taaagggtcatgttaacttgtgccctaagggcacatgttaaggaac 25119868  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 31054314 - 31054278
Alignment:
Q  170 catgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31054314 catgttaaggaacacaaaaagaacaactttacattgg 31054278  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 29508825 - 29508769
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||    
T  29508825 taacttgtgccctaagggcacatgttaaggaacccaaaaagagcaattttgcattgg 29508769  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 30033484 - 30033540
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||||| | || |||||||||||| |||||||| ||||||||||||||    
T  30033484 taacttgtgccctaaaggcatatgttaaggaactcaaaaagagcaactttgcattgg 30033540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 24940803 - 24940736
Alignment:
Q  138 aaatggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    |||||||| || |||||||| |||||||  ||||||||||| || ||||||||| ||| |||||||||    
T  24940803 aaatggtcttgttaacttgttccctaagagcacatgttaagcaatccaaaaagagcaagtttgcattg 24940736  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 27918333 - 27918391
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    ||||||| |||| | ||||| |||||||||||||| ||||||||| ||| |||||||||    
T  27918333 tgctaacgtgtgtcttaagggcacatgttaaggaatccaaaaagagcaattttgcattg 27918391  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 21894882 - 21894833
Alignment:
Q  137 taaatggtcctgctaacttgtgccctaaggacacatgttaaggaacccaa 186  Q
    |||| |||| |||||||||||||||| | | |||||||||||||||||||    
T  21894882 taaagggtcatgctaacttgtgcccttacggcacatgttaaggaacccaa 21894833  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 22019550 - 22019510
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaag 190  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  22019550 taacttgtgccctaagggcacatgttaagaaacccgaaaag 22019510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 27918496 - 27918460
Alignment:
Q  147 tgctaacttgtgccct-aaggacacatgttaaggaac 182  Q
    |||||||||||||||| ||||||||||||||||||||    
T  27918496 tgctaacttgtgccctcaaggacacatgttaaggaac 27918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 28675671 - 28675739
Alignment:
Q  136 ttaaatggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcatt 204  Q
    ||||| |||| || ||||||||||||| ||| ||||||||||| |||| || |||| ||| ||||||||    
T  28675671 ttaaagggtcatgttaacttgtgcccttagggcacatgttaagcaacctaataagagcaattttgcatt 28675739  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 36937136 - 36937188
Alignment:
Q  154 ttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||| ||||||||||||||||| |||| ||| ||| ||| ||||||    
T  36937136 ttgtgccctaatgacacatgttaaggaactcaaacagagcaattttacattgg 36937188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 50297637 - 50297693
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||||| ||| ||||||||||| |||| |||||||  || ||||||||||    
T  50297637 taacttgtgcccttagggcacatgttaagcaaccaaaaaagagtaattttgcattgg 50297693  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 39430421 - 39430365
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||| |||||||||| |||||||||||| |||||||| ||||||||||||||    
T  39430421 taacttgtgtcctaaggacatatgttaaggaactcaaaaagagcaactttgcattgg 39430365  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 47006757 - 47006701
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    |||||||||||||||||  ||||||||||||||||||||| | ||||||||||||||    
T  47006757 taacttgtgccctaagggtacatgttaaggaacccaaaaaaagcaactttgcattgg 47006701  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 28787833 - 28787776
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    |||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||    
T  28787833 tgctaacttgtgccctaaagacacttgttacggaacccaaaaa-aacaactttgcattg 28787776  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 45628481 - 45628419
Alignment:
Q  141 tggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcat 203  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||| ||||| | ||||| |||||    
T  45628481 tggtcatgctaacttgtgtcctaagggcacatattaaggaacctaaaaaaagcaactctgcat 45628419  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 30438358 - 30438416
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||| ||||||| ||||    
T  30438358 tgctaacttgtgtcctaagtacacatgttaaggaacctaaaaagaataactttgtattg 30438416  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 7509634 - 7509680
Alignment:
Q  142 ggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaa 188  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||    
T  7509634 ggtcatgctaacttgtgccctaagggcacatgttaagaaacccaaaa 7509680  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 16394994 - 16394931
Alignment:
Q  142 ggtcctgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    |||| ||||||||| || | ||||| |||| |||||||||||||||| ||||||||||||||||    
T  16394994 ggtcatgctaacttatgtcataagggcacaagttaaggaacccaaaatgaacaactttgcattg 16394931  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 31635605 - 31635557
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaa 195  Q
    ||||||||||| | |||||| |||||||||||||||| |||||||||||    
T  31635605 tgctaacttgtactctaagggcacatgttaaggaacctaaaaagaacaa 31635557  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 41884619 - 41884675
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||||| ||| | |||||||||||||||| || || ||||||||||||||||    
T  41884619 taacttgtgccttaaaggcacatgttaaggaacctaacaaaaacaactttgcattgg 41884675  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 51295700 - 51295743
Alignment:
Q  146 ctgctaacttgtgccctaaggacacatgttaaggaacccaaaaa 189  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  51295700 ctgctaacttgtgcccttagggcacatgttaagaaacccaaaaa 51295743  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 43949238 - 43949197
Alignment:
Q  147 tgctaacttgtgccctaaggacacatgttaaggaacccaaaa 188  Q
    |||||||||||||||| ||| ||||||||||| |||||||||    
T  43949238 tgctaacttgtgcccttagggcacatgttaagaaacccaaaa 43949197  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 1035708 - 1035676
Alignment:
Q  171 atgttaaggaacccaaaaagaacaactttgcat 203  Q
    |||||||| ||||||||||||||||||||||||    
T  1035708 atgttaagaaacccaaaaagaacaactttgcat 1035676  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 26176316 - 26176364
Alignment:
Q  157 tgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattg 205  Q
    |||||||| |||||||||||||||||| ||||  ||||| |||||||||    
T  26176316 tgccctaatgacacatgttaaggaaccaaaaagtaacaattttgcattg 26176364  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 29557630 - 29557577
Alignment:
Q  153 cttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    |||||||||||||  ||||||||||||||||||||| || |||||||| |||||    
T  29557630 cttgtgccctaagagcacatgttaaggaacccaaaatgagcaactttgtattgg 29557577  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 40044800 - 40044851
Alignment:
Q  149 ctaacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttg 200  Q
    |||||||||| | ||||| |||||||||||||||||||||||| ||| ||||    
T  40044800 ctaacttgtgtcgtaagggcacatgttaaggaacccaaaaagagcaattttg 40044851  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 554288 - 554344
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||    
T  554288 taacttgtgtcctaagagcacatgttaagaaatccaaaatgaacaattttgcattgg 554344  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 9780705 - 9780741
Alignment:
Q  149 ctaacttgtgccctaaggacacatgttaaggaaccca 185  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  9780705 ctaacttgtgccctaagggcacatgttaagtaaccca 9780741  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 10197154 - 10197098
Alignment:
Q  150 taacttgtgccctaaggacacatgttaaggaacccaaaaagaacaactttgcattgg 206  Q
    ||||||||| ||||| | || |||||||| |||| ||||||||||||||| ||||||    
T  10197154 taacttgtgtcctaaaggcatatgttaagtaacctaaaaagaacaactttacattgg 10197098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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