View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_low_13 (Length: 339)
Name: NF20950_low_13
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 51121722 - 51122045
Alignment:
| Q |
1 |
ctaccaaacaatggaatggaaatatacatattctcctacataaaaaatttcacttgcatcaatcattagaaatttgaaaagnnnnnnnggtcacttgtaa |
100 |
Q |
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| T |
51121722 |
ctaccaaacaatggaatggaaatatacatattctcctacataaaaaatttcacttgcatcaatcattagaaatttgaaaagaaaaaaaggtcacttgtaa |
51121821 |
T |
|
| Q |
101 |
ctaaacgtatgtggttataagtgaaataaactttgagtggccaagaaggtcnnnnnnnnnnnnnnnnnnnnnnntcatttttcatgattagaataggaaa |
200 |
Q |
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| T |
51121822 |
ctaaacatatgtggttataagtgaaataaacttttagtggccaagaaggtcaaaaaacaataaaaatagaaaaatcatttttcatgattagaataggaaa |
51121921 |
T |
|
| Q |
201 |
aatttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttccttgatgttgtctggtatgtc |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51121922 |
aatttagagaatgttttctaatttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaggtaaatctttccttgatgttgtctggtatgtc |
51122021 |
T |
|
| Q |
301 |
atttcatcttatcagtatatggtg |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
51122022 |
atttcatcttatcagtatatggtg |
51122045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 45245966 - 45246042
Alignment:
| Q |
204 |
ttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttcc |
280 |
Q |
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| T |
45245966 |
ttagagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggtatatgtttcc |
45246042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 48885966 - 48886017
Alignment:
| Q |
210 |
aatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcac |
261 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
48885966 |
aatgttttctcctttgtatagtgattgtcttttaaatgtctttccttttcac |
48886017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 39016718 - 39016681
Alignment:
| Q |
278 |
tccttgatgttgtctggtatgtcatttcatcttatcag |
315 |
Q |
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| T |
39016718 |
tccttgatgttgtctggtatgtcatttcatcttatcag |
39016681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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