View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_low_2 (Length: 652)
Name: NF20950_low_2
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 119 - 463
Target Start/End: Original strand, 28601166 - 28601510
Alignment:
| Q |
119 |
gtaatggagcacatatcccagaagagttacaaacaacgttgtttgtgtccttcaaggatgcagtattattcacctttttcctaatagttgcaacactgaa |
218 |
Q |
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| T |
28601166 |
gtaatggagcacatatcccagaagagttacaaacaacgttgtttgtgtccttcaaggatgcagtattattcacctttttcctaatagttgcaacactgaa |
28601265 |
T |
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| Q |
219 |
tgtatttaagtgtgtgcatccttataccagaatgtattggctctttgctttcaaaataaataatctctaactaggagtgcttctaagtgcattaattaat |
318 |
Q |
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| T |
28601266 |
tgtatttaagtgtgtgcatccttataccagaatgtattggctgtttgctttcaaaataaataatctctaactaggagtgcttctaagtgcattaattaat |
28601365 |
T |
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| Q |
319 |
tcatgttttccttactccgtttcatgatatccatggcttatttatcatgtctccatagtaagattactaacactgaagaacagagttatcaaattcaggc |
418 |
Q |
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| T |
28601366 |
tcatgttttccttactccgtttgatgatatccatggcttatttatcatgtctccatagtaagattactaacactgaagaacagagttatcaaattcaggc |
28601465 |
T |
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| Q |
419 |
tccaccaactaagtattctcaaacttaaattgataacgatcgagg |
463 |
Q |
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| T |
28601466 |
tccaccaactaagtattctcaaacttaaattgataacgatcgagg |
28601510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 460 - 626
Target Start/End: Original strand, 28601549 - 28601716
Alignment:
| Q |
460 |
gagggtaatgatctgatgtagtagtcgttagacattccaacctcgcatccggaaataagttgcaccaattatcatttgtcatagctcaatctagtttccc |
559 |
Q |
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| T |
28601549 |
gagggtaatgatctgatgtagtagtcgttagacattccaacctcgcatccggaaataagttgcaccaattatcatttgtcatagctcaatctagtttccc |
28601648 |
T |
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| Q |
560 |
ttctactatcagattcattccaagacttttgaaccaagtgcacgggtat-ccttcatctgaatatcaa |
626 |
Q |
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| T |
28601649 |
ttctactatcagattcattccaagacttttgaaccaagtgcacgggtatccctccatctgaatatcaa |
28601716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 28602228 - 28602120
Alignment:
| Q |
18 |
ataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttgtttcatgtcaatga |
117 |
Q |
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| T |
28602228 |
ataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttgtttcatgtcaatga |
28602129 |
T |
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| Q |
118 |
tgtaatgga |
126 |
Q |
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||||||||| |
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| T |
28602128 |
tgtaatgga |
28602120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 41094384 - 41094431
Alignment:
| Q |
20 |
aaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagat |
67 |
Q |
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| T |
41094384 |
aaaaaacatatgaacttgtagttaaagcatcatgtttgtaaacaagat |
41094431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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