View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20950_low_8 (Length: 444)

Name: NF20950_low_8
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20950_low_8
NF20950_low_8
[»] chr5 (7 HSPs)
chr5 (18-431)||(22126830-22127243)
chr5 (119-361)||(26692779-26693021)
chr5 (119-361)||(26962511-26962753)
chr5 (342-407)||(25251660-25251725)
chr5 (342-407)||(25315445-25315510)
chr5 (318-409)||(12411762-12411851)
chr5 (227-303)||(19937555-19937631)
[»] chr6 (4 HSPs)
chr6 (29-431)||(22458513-22458915)
chr6 (119-361)||(22836366-22836608)
chr6 (295-364)||(21164564-21164633)
chr6 (120-187)||(16221300-16221367)
[»] chr2 (2 HSPs)
chr2 (18-414)||(15497276-15497672)
chr2 (141-403)||(32136215-32136477)
[»] scaffold1127 (1 HSPs)
scaffold1127 (62-431)||(2343-2712)
[»] scaffold0597 (2 HSPs)
scaffold0597 (134-431)||(7979-8275)
scaffold0597 (40-87)||(7929-7976)
[»] scaffold0996 (1 HSPs)
scaffold0996 (18-405)||(2411-2798)
[»] chr7 (5 HSPs)
chr7 (295-431)||(1536132-1536268)
chr7 (120-247)||(17073436-17073563)
chr7 (321-391)||(22986820-22986890)
chr7 (118-187)||(7811883-7811952)
chr7 (322-403)||(22981982-22982063)
[»] scaffold1024 (1 HSPs)
scaffold1024 (75-391)||(711-1029)
[»] scaffold0003 (1 HSPs)
scaffold0003 (141-375)||(214971-215205)
[»] chr3 (2 HSPs)
chr3 (227-400)||(8478455-8478628)
chr3 (297-375)||(36031461-36031539)
[»] chr4 (1 HSPs)
chr4 (234-280)||(9283333-9283379)
[»] chr1 (1 HSPs)
chr1 (236-280)||(33066169-33066213)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 22127243 - 22126830
Alignment:
Q  18 catgtatgtttctttgttggtactggttttttcccttgtgcaattgcttgtttgtgagcattattgtcctggctggggtaaagccatctacaaactgtga 117  Q
    ||||| ||||||||||||||| ||||||||||||| ||||| | |||||||||||||| |||||| ||||| | |||||||||||||||||||| |||||    
T  22127243 catgtttgtttctttgttggtgctggttttttcccctgtgcgactgcttgtttgtgagtattattatcctgacgggggtaaagccatctacaaaatgtga 22127144  T
Q  118 tgtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaatttt 217  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||     
T  22127143 cgtcatggccaatgttttggcagtgtgaacaaaagtcagggagccactcataggccacctctacattaaaagagtatctttccctttcaaccgtaatttc 22127044  T
Q  218 atgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgccc 317  Q
    || |||||||||||||||||||||||| |||||||||||||||||||| |||||  |||||||||||| ||||||| ||||||||||||| |||||||||    
T  22127043 ataaaacatcttgcgagaaaaatccatatcgactaagatgcgagcataatgtccgtaaagtctcttggacgttgcactatcaataatgagcggtgtgccc 22126944  T
Q  318 atggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattcctatgctcat 417  Q
    | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  22126943 acggcacaagcaatttctcttaacgtcctatccatccagtactcttgtggcaattccatcaaacgaatccacacttgagcatgagtattcctttgcttat 22126844  T
Q  418 tcattttaaaatct 431  Q
    |||| |||||||||    
T  22126843 tcatgttaaaatct 22126830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 361
Target Start/End: Complemental strand, 26693021 - 26692779
Alignment:
Q  119 gtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaatttta 218  Q
    |||||| || ||||| |||||||| | |||||||||||| ||||| ||||| |||||||| ||||| || |  || ||||| || ||||| || || | |    
T  26693021 gtcatgtcctatgttctggcagtgggtacaaaaatcaggcagccattcatacgccacctcaacattgaatgcataaccttctctctcaacagtgatctca 26692922  T
Q  219 tgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgccca 318  Q
    || ||||| || |  || || ||||| || || |  ||||| ||||| || ||  |||| |  ||||| || || ||||||||||| ||||| |||||||    
T  26692921 tggaacatttttcttgagaagtccatatcaacaagaatgcgggcataatggccgtaaagacgtttggtagtagcgttatcaataataagtggggtgccca 26692822  T
Q  319 tggcactagcaatttctcgtaacgtcctatccatccagtactc 361  Q
      |||| ||||||||| |||| ||||||||||||||| |||||    
T  26692821 ctgcacaagcaatttcacgtagcgtcctatccatccaatactc 26692779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 361
Target Start/End: Complemental strand, 26962753 - 26962511
Alignment:
Q  119 gtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaatttta 218  Q
    |||||| || ||||| |||||||| | |||||||||||| ||||| ||||| |||||||| ||||| || |  || ||||| || ||||| || || | |    
T  26962753 gtcatgtcctatgttctggcagtgggtacaaaaatcaggcagccattcatacgccacctcaacattgaatgcataaccttctctctcaacagtgatctca 26962654  T
Q  219 tgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgccca 318  Q
    || ||||| || |  || || ||||| || || |  ||||| ||||| || ||  |||| |  ||||| || || ||||||||||| ||||| |||||||    
T  26962653 tggaacatttttcttgagaagtccatatcaacaagaatgcgggcataatggccgtaaagacgtttggtagtagcgttatcaataataagtggggtgccca 26962554  T
Q  319 tggcactagcaatttctcgtaacgtcctatccatccagtactc 361  Q
      |||| ||||||||| |||| ||||||||||||||| |||||    
T  26962553 ctgcacaagcaatttcacgtagcgtcctatccatccaatactc 26962511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 25251660 - 25251725
Alignment:
Q  342 gtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattc 407  Q
    ||||||||||||||||||||||| || |||||||| ||| ||||||| ||||  ||||||||||||    
T  25251660 gtcctatccatccagtactcttgcggtaattccattaaacgaatccagacttatgcatgagtattc 25251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 25315445 - 25315510
Alignment:
Q  342 gtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattc 407  Q
    ||||||||||||||||||||||| || |||||||| ||| ||||||| ||||  ||||||||||||    
T  25315445 gtcctatccatccagtactcttgcggtaattccattaaacgaatccagacttatgcatgagtattc 25315510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 409
Target Start/End: Complemental strand, 12411851 - 12411762
Alignment:
Q  318 atggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattcct 409  Q
    ||||| |||||||||||||  |  ||||| |||||||||||||  ||||| ||||||||||||   |||||||  |||||||| ||||||||    
T  12411851 atggcgctagcaatttctctgatagtcctttccatccagtact--tgtggtaattccatcaaacatatccacatctgagcatgtgtattcct 12411762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 19937555 - 19937631
Alignment:
Q  227 cttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataa 303  Q
    |||||||| ||||||||||||||| |  || || ||||| || |||||||| | ||||| ||| |||||||||||||    
T  19937555 cttgcgagtaaaatccatgtcgacaagtatacgtgcataatggccaaaaagacgcttggacgtcgcattatcaataa 19937631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 29 - 431
Target Start/End: Complemental strand, 22458915 - 22458513
Alignment:
Q  29 ctttgttggtactggttttttcccttgtgcaattgcttgtttgtgagcattattgtcctggctggggtaaagccatctacaaactgtgatgtcatggcca 128  Q
    ||||| |||| ||||||||||||||||||| | ||||||||| ||||||||||| ||||| | |||||||||||||||||||| ||||| ||||||||||    
T  22458915 ctttgatggtgctggttttttcccttgtgcgactgcttgtttatgagcattattatcctgacgggggtaaagccatctacaaaatgtgacgtcatggcca 22458816  T
Q  129 atgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaattttatgaaacatct 228  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  22458815 atgttttggcagtgtgaacaaaagtcagggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaatttcataaaacatct 22458716  T
Q  229 tgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcactagc 328  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| |||||||||| ||||||||     
T  22458715 tgcgagaaaaatccatatcgactaagatgcgagcatagtgtccataaagtctcttggatgttgcattatcaataatgagcggtgtgcccacggcactaga 22458616  T
Q  329 aatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattcctatgctcattcattttaaaa 428  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| || ||||||    
T  22458615 aatttctcttaacgtcctatccatctagtactcttgtggcaattccatcaaacgaatccacacttgagcatgagtattcctttgcttattaatgttaaaa 22458516  T
Q  429 tct 431  Q
    |||    
T  22458515 tct 22458513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 361
Target Start/End: Original strand, 22836366 - 22836608
Alignment:
Q  119 gtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaatttta 218  Q
    |||||| || ||||| |||||||| | |||||||||||| ||||| ||||| |||||||| ||||| || |  || ||||| || ||||| || || | |    
T  22836366 gtcatgtcctatgttctggcagtgggtacaaaaatcaggcagccattcatacgccacctcaacattgaatgcataaccttctctctcaacagtgatctca 22836465  T
Q  219 tgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgccca 318  Q
    || ||||| || |  || || ||||| || || |  ||||| ||||| || ||  |||| |  ||||| || || ||||||||||| ||||| |||||||    
T  22836466 tggaacatttttcttgagaagtccatatcaacaagaatgcgggcataatggccgtaaagacgtttggtagtagcgttatcaataataagtggggtgccca 22836565  T
Q  319 tggcactagcaatttctcgtaacgtcctatccatccagtactc 361  Q
      |||| ||||||||| |||| ||||||||||||||| |||||    
T  22836566 ctgcacaagcaatttcacgtagcgtcctatccatccaatactc 22836608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 21164564 - 21164633
Alignment:
Q  295 tatcaataatgagtggtgtgcccatggcactagcaatttctcgtaacgtcctatccatccagtactcttg 364  Q
    ||||||||| |||||| ||||||| | |||||| ||||||||| | ||||||||||||||| ||||||||    
T  21164564 tatcaataaggagtggagtgcccacgacactagaaatttctcgaagcgtcctatccatccaatactcttg 21164633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 16221367 - 16221300
Alignment:
Q  120 tcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaa 187  Q
    ||||| |||||  |||| ||||| | |||||| || ||||||||||||||||||||||| ||||||||    
T  16221367 tcatgcccaattatttgacagtgagtacaaaagtccgggagccactcataggccacctctacattaaa 16221300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 15497672 - 15497276
Alignment:
Q  18 catgtatgtttctttgttggtactggttttttcccttgtgcaattgcttgtttgtgagcattattgtcctggctggggtaaagccatctacaaactgtga 117  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  15497672 catgtctgtttctttgttggtgctggttttttcccctgtgcaactgcttgtttgtgagcattattatcctggcgggagtaaagccatctacaaactgtga 15497573  T
Q  118 tgtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaatttt 217  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  15497572 catcatggccaatgttttggcagtgtgaacaaaattcagggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaatttc 15497473  T
Q  218 atgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgccc 317  Q
    || |||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||| |    
T  15497472 ataaaacatcttgcgagaaaaatccatatcaactaagatgcgagcatagtttccataaagtctcttggacgttgcattatcaataatgagcggtgtgctc 15497373  T
Q  318 atggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattcctatgct 414  Q
    |  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  15497372 acagcactagcaatttctcttaacgtcctatccatccaatactcttgtggcaattccatcaaacgaatccacacttgagcatgagtgttcctttgct 15497276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 141 - 403
Target Start/End: Original strand, 32136215 - 32136477
Alignment:
Q  141 tgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaattttatgaaacatcttgcgagaaaaat 240  Q
    |||||||||||||| |||||||||||||| || |||||||| ||||||| ||||||||||||||| || || |||| ||| ||||| || || | |||||    
T  32136215 tgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccactgtgatttcatggaacattttacgtgcaaaat 32136314  T
Q  241 ccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcactagcaatttctcgtaa 340  Q
    ||||||| |||||||||||||| || || ||| | || ||||||||||| ||||| |||||||| ||||||||||| ||||| |||| ||||||||||||    
T  32136315 ccatgtctactaagatgcgagcgtaatgaccatagagcctcttggtcgtggcattgtcaataataagtggtgtgccaatggcgctagaaatttctcgtaa 32136414  T
Q  341 cgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagt 403  Q
     ||||||||||||||||| |||||||| ||||||||||   ||||||||||||||||||||||    
T  32136415 agtcctatccatccagtattcttgtggtaattccatcaggcgaatccacacttgagcatgagt 32136477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 62 - 431
Target Start/End: Complemental strand, 2712 - 2343
Alignment:
Q  62 tgcttgtttgtgagcattattgtcctggctggggtaaagccatctacaaactgtgatgtcatggccaatgttttggcagtgtgaacaaaaatcagggagc 161  Q
    |||||||||||||| |||||| ||||| | |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| |||||||||    
T  2712 tgcttgtttgtgagtattattatcctgacgggggtaaagccatctacaaaatgtgacatcatggccaatgttttggcagtgtgaacaaaagtcagggagc 2613  T
Q  162 cactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaattttatgaaacatcttgcgagaaaaatccatgtcgactaagatgcgag 261  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  2612 cactcataggccacctctacattaaaatagtatccttccctttcaaccataatttcataaaacatcttgcgagaaaaatccatatcgactaagatgcgag 2513  T
Q  262 catagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcactagcaatttctcgtaacgtcctatccatccagtactc 361  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  2512 catagtgtccataaagtctcttggacgttgcattatcaataatgagcggtgtgcccacggcactagcaatttctcttaacgtcctatccatccagtactc 2413  T
Q  362 ttgtggcaattccatcaaatgaatccacacttgagcatgagtattcctatgctcattcattttaaaatct 431  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| | || |||||| |||||||||    
T  2412 ttgtggcaattccatcaaacgaatccacacttgagcatgagtatcccttttcttattcatgttaaaatct 2343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0597 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 134 - 431
Target Start/End: Original strand, 7979 - 8275
Alignment:
Q  134 ttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaattttatgaaacatcttgcga 233  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  7979 ttggcagtgtgaacaaaagtcaaggagccactcataggccacctctacattaaaagagtatccttccctttcaaccgtaatttcataaaacatcttgcga 8078  T
Q  234 gaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcactagcaattt 333  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||   |||||| |||||    
T  8079 gaaaaatccgtatcgactaagatgcgagcatagtgtccataaagtctcttggacgttgcattatc-ataatgagcggtgtgcccacaacactagaaattt 8177  T
Q  334 ctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtattcctatgctcattcattttaaaatct 431  Q
    ||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  8178 ctcttaacgtccaatccatccactactcttgtggaaattccatcaaatgaatccacacttgagcatgagtattcctttgcttattcatgttaaaatct 8275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0597; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 7929 - 7976
Alignment:
Q  40 ctggttttttcccttgtgcaattgcttgtttgtgagcattattgtcct 87  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| ||||    
T  7929 ctggttttttcccctgtgcaactgcttatttgtgagcattattatcct 7976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 2798 - 2411
Alignment:
Q  18 catgtatgtttctttgttggtactggttttttcccttgtgcaattgcttgtttgtgagcattattgtcctggctggggtaaagccatctacaaactgtga 117  Q
    ||||| |||| |||| || || ||||||| || |||||||| | |||||| ||||| | | | || ||||| | ||| || ||||| || ||| ||| ||    
T  2798 catgtttgttgctttttttgtgctggtttctttccttgtgcgactgcttgcttgtgtgtaatgttttcctgacggggatagagccacctgcaagctgaga 2699  T
Q  118 tgtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaatttt 217  Q
     |||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||| ||||||||||| || ||||| ||||| ||||||||||     
T  2698 cgtcatggccaatgttttggcagtgcgaacaaaaggcagggagccactcgtaggccacctccacattaaaagaataaccttctctttccaccgtaatttc 2599  T
Q  218 atgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgccc 317  Q
    ||||||||||| |||||| |||||||| || |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||    
T  2598 atgaaacatctggcgagagaaatccatatcaactaagatgcgagcatagtgtccgtaaagtctcttggtcgttgcactatcaataatgagcggtgtgccc 2499  T
Q  318 atggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagtat 405  Q
    |  |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  2498 actgcactagcgatttctcttaacgtcctatccatccagtattcttgtggcaattccatcaagcgaatccacacttgagcatgagtat 2411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 295 - 431
Target Start/End: Complemental strand, 1536268 - 1536132
Alignment:
Q  295 tatcaataatgagtggtgtgcccatggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttg 394  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  1536268 tatcaataatgagtggtgtgcccacggcactagcaatttctcgtagcgtcctatccatccagtactcttgtggaaattccatcaaacgaatccacacttg 1536169  T
Q  395 agcatgagtattcctatgctcattcattttaaaatct 431  Q
    |||||||||||||||||||| ||||||||||||||||    
T  1536168 agcatgagtattcctatgcttattcattttaaaatct 1536132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 17073436 - 17073563
Alignment:
Q  120 tcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaattttat 219  Q
    |||||||  ||| |||| || |||| |||||| || || |||||||||||||||||||| |||||||| |  || |||||||| |||||||| || | ||    
T  17073436 tcatggcttatggtttgacaatgtgtacaaaattccggaagccactcataggccacctccacattaaacgcataaccttccctctcaaccgtgatctcat 17073535  T
Q  220 gaaacatcttgcgagaaaaatccatgtc 247  Q
    |||| |  ||||| ||||||||||||||    
T  17073536 gaaagagtttgcgtgaaaaatccatgtc 17073563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 22986890 - 22986820
Alignment:
Q  321 gcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacac 391  Q
    ||||||||||||||||  |  ||||| ||||||||||| |||||||| | |||||||||| ||||||||||    
T  22986890 gcactagcaatttctctgagagtcctctccatccagtattcttgtggtatttccatcaaacgaatccacac 22986820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 7811883 - 7811952
Alignment:
Q  118 tgtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggccacctcgacattaaa 187  Q
    |||| ||||| ||||| || || || ||||||||||  ||||||||||| ||||||||||||||| ||||    
T  7811883 tgtcgtggcctatgttatgacaatgcgaacaaaaattcgggagccactcgtaggccacctcgacagtaaa 7811952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 22981982 - 22982063
Alignment:
Q  322 cactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatgagt 403  Q
    |||||||||||||  | | ||||||||||||||| |||||||| |||| |||||  |   ||||||||||||| ||||||||    
T  22981982 cactagcaatttcctgaagcgtcctatccatccaatactcttgaggcagttccaaaagtcgaatccacacttgtgcatgagt 22982063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 75 - 391
Target Start/End: Complemental strand, 1029 - 711
Alignment:
Q  75 gcattattgtcctggctggggtaaagccatctacaaactgtgatgtcatggccaatgttttggcagtgtgaacaaaaatcagggagccactcataggcca 174  Q
    |||||| | ||||||| ||| |||||||||| ||| || |  |  ||||| ||||||||||||||||||| ||||||||| ||||||||||| ||  | |    
T  1029 gcattactttcctggcggggataaagccatcgacacacggaaacatcatgaccaatgttttggcagtgtgtacaaaaatccgggagccactcgtatacga 930  T
Q  175 cctcgacattaaaagagtatccttccctttcaaccgtaatttt--atgaaacatcttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtcca 272  Q
    |||| | |||||| | |||||||||||| ||||| || |||||  |||||| |  || || ||||||||||| || ||||| ||||||||||||||||||    
T  929 cctcaatattaaatgcgtatccttccctctcaacagtgatttttcatgaaataatttccgtgaaaaatccatatccactaaaatgcgagcatagtgtcca 830  T
Q  273 aaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaatt 372  Q
    ||||  |  ||||| || |||||||||||||  ||||||||||||| ||||||||||||||| |  |  ||||| |||||||| ||||| ||||| | ||    
T  829 aaaatgcgtttggtggtcgcattatcaataagcagtggtgtgcccacggcactagcaatttccctgagagtcctgtccatccaatactcctgtgggagtt 730  T
Q  373 ccatcaaatgaatccacac 391  Q
    |||||||  ||||||||||    
T  729 ccatcaatcgaatccacac 711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 375
Target Start/End: Complemental strand, 215205 - 214971
Alignment:
Q  141 tgtgaacaaaaatcagggagccactcataggccacctcgacattaaaagagtatccttccctttcaaccgtaattttatgaaacatcttgcgagaaaaat 240  Q
    |||| ||| ||||| |||||||| || || |||||||| || | |||||  |||||||  || ||||| ||||| | |||||| || | ||||||||| |    
T  215205 tgtgtacagaaatccgggagccattcgtatgccacctccacctgaaaagcatatccttttctctcaacagtaatctcatgaaaaatttggcgagaaaagt 215106  T
Q  241 ccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcactagcaatttctcgtaa 340  Q
    |||||||||| |  || || || || |||||| ||  || |||||| |||||| ||||||||| ||| || || ||||  ||||||||||| ||||| |     
T  215105 ccatgtcgacaagaatacgtgcgtaatgtccataagttcgcttggtagttgcactatcaataaggagcggggtacccaaagcactagcaatctctcgcag 215006  T
Q  341 cgtcctatccatccagtactcttgtggcaattcca 375  Q
     |||||||||||||| |||||||| || |||||||    
T  215005 tgtcctatccatccaatactcttgaggtaattcca 214971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 400
Target Start/End: Complemental strand, 8478628 - 8478455
Alignment:
Q  227 cttgcgagaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtctcttggtcgttgcattatcaataatgagtggtgtgcccatggcacta 326  Q
    |||||||| ||||||||||||||| |  ||||| ||||| || |||||||| | ||||| ||| |||||||||||||  || || || || || ||||||    
T  8478628 cttgcgagtaaaatccatgtcgacaagtatgcgtgcataatggccaaaaagacgcttggacgtcgcattatcaataagaagcggagtaccaatcgcacta 8478529  T
Q  327 gcaatttctcgtaacgtcctatccatccagtactcttgtggcaattccatcaaatgaatccacacttgagcatg 400  Q
    ||||| || || |  |||||||||||||| |||||||| || ||  |||||||| | ||||| ||||| |||||    
T  8478528 gcaatctcacgaagagtcctatccatccaatactcttggggtaaagccatcaaacggatccaaacttgtgcatg 8478455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 36031461 - 36031539
Alignment:
Q  297 tcaataatgagtggtgtgcccatggcactagcaatttctcgtaacgtcctatccatccagtactcttgtggcaattcca 375  Q
    ||||||| ||||||||||||||   ||||||||||||| || | ||||||||||||||| || ||||| || |||||||    
T  36031461 tcaataaggagtggtgtgcccaaatcactagcaatttcccgaagcgtcctatccatccaatattcttgaggtaattcca 36031539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 9283379 - 9283333
Alignment:
Q  234 gaaaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtct 280  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||||    
T  9283379 gaaaaatcaatgtcgactaagatacatgcatagtgtccaaaaagtct 9283333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 33066169 - 33066213
Alignment:
Q  236 aaaatccatgtcgactaagatgcgagcatagtgtccaaaaagtct 280  Q
    |||||| ||||||||||| || || ||||||||||||||||||||    
T  33066169 aaaatcaatgtcgactaatatacgtgcatagtgtccaaaaagtct 33066213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University