View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20950_low_9 (Length: 389)
Name: NF20950_low_9
Description: NF20950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20950_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 34186786 - 34186424
Alignment:
| Q |
19 |
agaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgccatttgttcaccatacattctcatcttattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186786 |
agaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgccatttgttcaccatacattctcatcttattt |
34186687 |
T |
|
| Q |
119 |
gcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186686 |
gcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctct |
34186587 |
T |
|
| Q |
219 |
tcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgc |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186586 |
tcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgc |
34186487 |
T |
|
| Q |
319 |
ttgaaagagataattttttgccttcaaatccttcagcttcaactcctccaatgttttcttctc |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186486 |
ttgaaagagataattttttgccttcaaatccttcagcttcaactcctccaatgttttcttctc |
34186424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 11847771 - 11847703
Alignment:
| Q |
290 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
358 |
Q |
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| T |
11847771 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
11847703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 518668 - 518305
Alignment:
| Q |
19 |
agaacatactacataatcgtacctagcggtcattgagcga--agaatcttttcgataacagtaagatccgccatttgttcaccatacattctcatcttat |
116 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||| ||||| | |
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| T |
518668 |
agaacatactacataatcgtacctggaggttattgagcgagaagaatcttttcgataacagtaagattcgacatttgttcaccatgcattcttatcttgt |
518569 |
T |
|
| Q |
117 |
ttgcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctct |
216 |
Q |
| |
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|| ||||||||| || |||||||| |||||| ||| ||||||||| | |||||| ||||| | ||| || |||| | ||||||||||||||||| |
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| T |
518568 |
ttacaattgtgacagttcgagcaaaatagtcgataattgattctccattcttcatctgtaaaatctaccagtcacgtcacagggcctgaagctgtgctcg |
518469 |
T |
|
| Q |
217 |
cttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaatt |
316 |
Q |
| |
|
|||| |||||||||| ||||||||| ||| || || ||| || ||||||||||| ||| | || || | |||||||||||||||| ||||||||||| |
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| T |
518468 |
cttccctctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgttttttaaaattgtttcaagcacaactcgatcaatt |
518371 |
T |
|
| Q |
317 |
gcttgaaagagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
381 |
Q |
| |
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||||||||||| | |||||||||||| ||||| | || ||| | ||| ||||||||||||||||| |
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| T |
518370 |
gcttgaaagaggtgattttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
518305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 366994 - 367356
Alignment:
| Q |
19 |
agaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgccatttgttcaccatacattc-tcatcttatt |
117 |
Q |
| |
|
|||||| ||||||||||||||| | | ||| |||||||||||||||||||||| ||| ||||||| || |||||| |||| |||||||| | ||||| || |
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| T |
366994 |
agaacacactacataatcgtacatggaggttattgagcgaagaatcttttcgacaacggtaagattcgacatttggtcactatacattcttaatcttgtt |
367093 |
T |
|
| Q |
118 |
tgcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctc |
217 |
Q |
| |
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| |||||||||| || |||||||| ||||| |||| ||||||||| | |||||| ||||| | ||| || |||| | ||||||||| || |||| | |
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| T |
367094 |
tacaattgtgagagttcgagcaaaatagtcattaattgattctccattcttcatctgtaaaatctaccagtcacgtcacagggcctgaagttgagctcgc |
367193 |
T |
|
| Q |
218 |
ttcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattg |
317 |
Q |
| |
|
||| |||||||||| ||||||||| ||| || || ||| || ||||||||||| ||| | || || | |||| ||||||||||| |||||||||||| |
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| T |
367194 |
ttccctctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgttttttaaaattatttcaagcacaactcgatcaattg |
367291 |
T |
|
| Q |
318 |
cttgaaagagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
381 |
Q |
| |
|
|||||||||| | | |||||||||| ||||| | || ||| | ||| ||||||||||||||||| |
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|
| T |
367292 |
cttgaaagaggtgactttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
367356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 14864521 - 14864448
Alignment:
| Q |
287 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaa |
360 |
Q |
| |
|
||||| ||||| || ||| ||||||||||||||||| | | |||||| |||||||| | ||||||||||||||| |
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| T |
14864521 |
agaatggtttcgagaacaactcgatcaattgcttgatacaaataattctttgcctttagatccttcagcttcaa |
14864448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 26545396 - 26545341
Alignment:
| Q |
287 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt |
342 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||| |||||||||||||| |
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|
| T |
26545396 |
agaattgtttcaagcacatcacgagaaattgcttgaaagaggtaattttttgcctt |
26545341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 15592637 - 15592569
Alignment:
| Q |
290 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
358 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||| || |||||||| |||||||| ||| ||| |||| |
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|
| T |
15592637 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
15592569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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