View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20951_high_5 (Length: 287)

Name: NF20951_high_5
Description: NF20951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20951_high_5
NF20951_high_5
[»] chr6 (53 HSPs)
chr6 (1-280)||(30059883-30060162)
chr6 (115-280)||(29887296-29887461)
chr6 (115-280)||(28926382-28926547)
chr6 (125-280)||(24730854-24731009)
chr6 (115-256)||(29835238-29835379)
chr6 (115-256)||(29894576-29894717)
chr6 (118-280)||(29073762-29073924)
chr6 (118-280)||(29078526-29078688)
chr6 (118-280)||(29106335-29106497)
chr6 (115-256)||(29866672-29866813)
chr6 (115-280)||(30061830-30061995)
chr6 (125-280)||(24890091-24890246)
chr6 (115-280)||(29211228-29211393)
chr6 (115-277)||(24263587-24263749)
chr6 (115-280)||(29905638-29905803)
chr6 (115-280)||(30126890-30127055)
chr6 (125-280)||(29882434-29882589)
chr6 (125-280)||(29909590-29909745)
chr6 (127-272)||(24886413-24886557)
chr6 (115-280)||(30118576-30118741)
chr6 (125-280)||(29903245-29903400)
chr6 (125-280)||(29357824-29357979)
chr6 (119-278)||(29929274-29929433)
chr6 (125-278)||(29116262-29116415)
chr6 (115-278)||(29085019-29085182)
chr6 (115-280)||(29348433-29348598)
chr6 (115-278)||(29889731-29889894)
chr6 (188-280)||(29898076-29898168)
chr6 (137-272)||(29946444-29946579)
chr6 (1-122)||(30061581-30061705)
chr6 (157-278)||(29099344-29099465)
chr6 (176-280)||(29366317-29366421)
chr6 (172-280)||(29876824-29876932)
chr6 (180-280)||(30999838-30999938)
chr6 (115-243)||(29949732-29949860)
chr6 (7-122)||(29866938-29867053)
chr6 (186-280)||(24271853-24271947)
chr6 (158-280)||(30149526-30149648)
chr6 (127-280)||(25451117-25451270)
chr6 (7-122)||(29887586-29887701)
chr6 (182-248)||(16702057-16702123)
chr6 (26-122)||(29835504-29835600)
chr6 (7-122)||(29894842-29894957)
chr6 (128-243)||(29953542-29953657)
chr6 (115-173)||(24271799-24271857)
chr6 (163-264)||(30053442-30053543)
chr6 (7-99)||(24271559-24271651)
chr6 (125-200)||(29912051-29912126)
chr6 (125-200)||(29914071-29914146)
chr6 (7-122)||(30126650-30126765)
chr6 (181-243)||(15727090-15727152)
chr6 (155-280)||(30135124-30135250)
chr6 (188-280)||(24739103-24739195)
[»] scaffold0573 (1 HSPs)
scaffold0573 (115-280)||(4136-4301)
[»] scaffold0237 (1 HSPs)
scaffold0237 (125-280)||(22342-22497)
[»] chr3 (4 HSPs)
chr3 (161-279)||(24219116-24219234)
chr3 (188-281)||(24226818-24226911)
chr3 (182-252)||(33997967-33998037)
chr3 (115-243)||(16351086-16351214)
[»] chr2 (1 HSPs)
chr2 (141-272)||(15062737-15062868)
[»] chr1 (5 HSPs)
chr1 (170-282)||(10130134-10130246)
chr1 (181-280)||(17251312-17251411)
chr1 (155-280)||(19490249-19490374)
chr1 (181-264)||(41316274-41316358)
chr1 (192-252)||(41198768-41198828)
[»] scaffold0054 (1 HSPs)
scaffold0054 (216-280)||(53532-53596)
[»] scaffold0572 (1 HSPs)
scaffold0572 (181-280)||(3232-3331)
[»] chr7 (1 HSPs)
chr7 (115-243)||(3643073-3643201)
[»] scaffold0014 (3 HSPs)
scaffold0014 (116-264)||(137389-137537)
scaffold0014 (182-278)||(121382-121478)
scaffold0014 (194-264)||(104652-104722)
[»] scaffold0019 (1 HSPs)
scaffold0019 (181-243)||(126024-126086)
[»] scaffold0429 (1 HSPs)
scaffold0429 (181-264)||(6211-6294)
[»] scaffold0051 (2 HSPs)
scaffold0051 (181-280)||(47804-47903)
scaffold0051 (196-264)||(43201-43269)
[»] chr4 (1 HSPs)
chr4 (176-243)||(44262489-44262556)
[»] scaffold0654 (1 HSPs)
scaffold0654 (182-243)||(1122-1183)
[»] chr8 (1 HSPs)
chr8 (163-224)||(9782594-9782655)
[»] scaffold0652 (1 HSPs)
scaffold0652 (182-278)||(1197-1293)
[»] scaffold0110 (1 HSPs)
scaffold0110 (188-280)||(43777-43869)
[»] scaffold0086 (1 HSPs)
scaffold0086 (186-230)||(31220-31264)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 53)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 30059883 - 30060162
Alignment:
Q  1 tctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgat 100  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30059883 tctctccgccttatcattatcatttttatcaaacagagaacgtataattattctgtaagtcacagcatttggatagcaattattgtccttcatttttgat 30059982  T
Q  101 agcaaagccaaggctccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059983 agcaaagccaaggctccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaa 30060082  T
Q  201 tatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060083 cctgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 30060162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 29887461 - 29887296
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  29887461 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgccttgtcaacctgatggtttttg 29887362  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  29887361 cataaagcatctaataaagaactgtaagtaattatatcaggtggttgacctctatcatgcatctca 29887296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 28926382 - 28926547
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||| ||| |||||||||| |||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28926382 tccattaataagaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgccttgtcaacatgatggtttttg 28926481  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  |||| |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  28926482 cataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctca 28926547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 24731009 - 24730854
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    |||| ||||| |||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24731009 agaacagtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcat 24730910  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      ||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||    
T  24730909 ccaatatagaattgtaagttattatattaggtggttgacctctatcatgcatctca 24730854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 29835379 - 29835238
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  29835379 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgccttgtcaacctgatggtttttg 29835280  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggt 256  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  29835279 cataaagcatccaatatagaactgtaagtaattatatcaggt 29835238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 29894717 - 29894576
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  29894717 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgccttgtcaacctgatggtttttg 29894618  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggt 256  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  29894617 cataaagcatccaatatagaactgtaagtaattatatcaggt 29894576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 29073924 - 29073762
Alignment:
Q  118 atcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcat 217  Q
    |||||| |||||||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29073924 atcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcat 29073825  T
Q  218 aaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||  ||||||||| |||||||||||||||||||| ||  ||||||||||| |||||||    
T  29073824 aaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctca 29073762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 29078688 - 29078526
Alignment:
Q  118 atcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcat 217  Q
    |||||| |||||||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29078688 atcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcat 29078589  T
Q  218 aaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||  ||||||||| |||||||||||||||||||| ||  ||||||||||| |||||||    
T  29078588 aaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctca 29078526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 29106497 - 29106335
Alignment:
Q  118 atcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcat 217  Q
    |||||| |||||||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29106497 atcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcat 29106398  T
Q  218 aaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||  ||||||||| |||||||||||||||||||| ||  ||||||||||| |||||||    
T  29106397 aaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctca 29106335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 29866813 - 29866672
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  29866813 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgccttgtcaacctgatggtttttg 29866714  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggt 256  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  29866713 cataaagcatccaatatagaactgtaagtaattatatcaggt 29866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 30061830 - 30061995
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    |||| ||||||||||||||| |||||||||||| ||| | |||||||| ||||||||||||| ||||||||  ||||||||||||| |||||||  ||||    
T  30061830 tccaccaattagaatagtgtatgtgtaaatattcggttgaataccctgatctttcaattttgataataatgtgattgccttgtcaagatgatggcgtttg 30061929  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  30061930 cataaagcatccaatatagaattgtaagtaattatattaggtggttgacctctatcatgcatctca 30061995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 125 - 280
Target Start/End: Original strand, 24890091 - 24890246
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    ||||| |||| |||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24890091 agaatggtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcat 24890190  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      ||||||||| ||||||||| ||||| |||| | ||||||||||||| |||||||    
T  24890191 ccaatatagaactgtaagtaactatattaggtggctgacctctatcatgcatctca 24890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 29211228 - 29211393
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||  ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||   ||||| |||||    
T  29211228 tccatcaataagaatagtgtatgtgtgcatatttggtcgaataccttggtctttcaattttgttaataatgcaactgccttgtcaacccgatgggttttg 29211327  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  ||||||||| ||||||||| ||||| |||| ||||||||||||||| |||||||    
T  29211328 cataaagcatccaatatagaactgtaagtaactatattaggtggttgacctctatcatgcatctca 29211393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 24263587 - 24263749
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||    
T  24263587 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttattaataatgcaattgccttgtcaaccagatggtttttg 24263686  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatc 277  Q
    ||||| ||||  ||||||||| |||| || |||||||||||| |||| |||| ||||| ||||    
T  24263687 cataaggcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatc 24263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 29905803 - 29905638
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| ||||| |||| |||||| ||||||||| | |||||| ||||||||||||||||||||||||  |||||||||||||  |||| |||||||    
T  29905803 tccatcaataagaatggtgtatgtgtacatatttggttgaatacccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttg 29905704  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  ||||||||| | |||||||||||||||||| | ||||||||||||| |||||||    
T  29905703 cataaagcatccaatatagaactctaagtaattatatcaggtggctgacctctatcatgcatctca 29905638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 30126890 - 30127055
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| | | ||||| | |||||||||| ||| ||||| ||||| ||||||||||| |||||||  ||||||||||||    
T  30126890 tccatcaataagaatagtgtatgtgtacacacttggttgaataccctggtttttaaatttcgttaacaatgcaattgctttgtcaacctgatggtttttg 30126989  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  30126990 cataaagcatccaatatagaattgtaaataattatatcaggtggttgacctctatcatgcatctca 30127055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 29882589 - 29882434
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    |||||||||| |||||  |||| |||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  29882589 agaatagtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgcaattgctttgtcaacatgatgttttttgcataaagcat 29882490  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      |||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  29882489 ccaatatagaattgtaggtaattatatcaggttgttgccctcgatcatgcatctca 29882434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 29909745 - 29909590
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    |||||||||| |||||  |||| |||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  29909745 agaatagtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgcaattgctttgtcaacatgatgttttttgcataaagcat 29909646  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      |||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  29909645 ccaatatagaattgtaggtaattatatcaggttgttgccctcgatcatgcatctca 29909590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 24886413 - 24886557
Alignment:
Q  127 aatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgcc-ttgtcaatatgatggtttttgcataaagcatt 225  Q
    |||||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||     
T  24886413 aatagtgtatgtgtacatatctggtcgaataccctggtctttcaattttgttaataatgcaattgcctttgtc-acatgatggttttt-cataaagcatc 24886510  T
Q  226 taatatagaattgtaagtaattatatcaggtagttgacctctatcat 272  Q
     |||||||||||||||||||||||||||||| | |||||||||||||    
T  24886511 caatatagaattgtaagtaattatatcaggtggctgacctctatcat 24886557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 30118576 - 30118741
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| ||||| |||| |||||| ||||||||| | || ||| ||||||||||||||||||||||||  |||||||||||||  |||| |||||||    
T  30118576 tccatcaataagaatggtgtatgtgtacatatttggttgaattcccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttg 30118675  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  ||||||||| | |||||||||||||||||| | ||||||||||||| |||||||    
T  30118676 cataaagcatccaatatagaactctaagtaattatatcaggtggctgacctctatcatgcatctca 30118741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 29903400 - 29903245
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    ||||| |||| |||||  ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||  |||||| ||||||||||||||||    
T  29903400 agaatggtgtatgtgttcatatttggtcgaataccctggtctttcaattttgttaataacgcaattgctttgccagcatgatgttttttgcataaagcat 29903301  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      |||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  29903300 ccaatatagaattgtaggtaattatatcaggttgttgccctcgatcatgcatctca 29903245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 125 - 280
Target Start/End: Original strand, 29357824 - 29357979
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    |||||||||| |||||| ||||||||| | |||||||||| |||||  | ||||||||| |||||||| |||||||  ||||||||||||||||||||||    
T  29357824 agaatagtgtatgtgtacatatttggttgaataccctggtttttcatctgtgttaataacgcaattgcattgtcaacctgatggtttttgcataaagcat 29357923  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      ||||||||| ||||||||| ||||| |||| ||||||||||||||| |||||||    
T  29357924 ccaatatagaactgtaagtaactatattaggtggttgacctctatcatgcatctca 29357979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 29929433 - 29929274
Alignment:
Q  119 tcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcata 218  Q
    ||||| |||||||||| |||||| | | ||||| | |||||||||||||| ||||| ||||| ||||||||||| |||||||  |||||| |||||||||    
T  29929433 tcaataagaatagtgtatgtgtacacacttggttgaataccctggtctttgaatttcgttaacaatgcaattgctttgtcaacctgatgggttttgcata 29929334  T
Q  219 aagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 278  Q
    |||||| |||||||||||||||||||| ||||| ||||  |  ||||||||||| |||||    
T  29929333 aagcatctaatatagaattgtaagtaactatattaggtgctacacctctatcatgcatct 29929274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 278
Target Start/End: Complemental strand, 29116415 - 29116262
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    |||||| ||| |||||| ||||||||| | ||||||| |||||||||||| ||||| ||||||||||| |||||||  |||||| |||||||||||||||    
T  29116415 agaatactgtatgtgtacatatttggttgaatacccttgtctttcaatttcgttaacaatgcaattgctttgtcaacttgatggattttgcataaagcat 29116316  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 278  Q
     |||||||||||||||||||  ||||  |||| ||  ||||||||||| |||||    
T  29116315 ctaatatagaattgtaagtacgtatagtaggtggtacacctctatcatgcatct 29116262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 278
Target Start/End: Complemental strand, 29085182 - 29085019
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| ||  ||||| | |||||||||||||| ||||| ||||  ||||||||||| |||||||  |||||| |||||    
T  29085182 tccatcaataagaatagtgtatgtgtacatgcttggttgaataccctggtctttaaatttcgttatcaatgcaattgctttgtcaacttgatgggttttg 29085083  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 278  Q
     ||||||||| || ||||||||||||||||| ||||| |||| ||  ||||||||||| |||||    
T  29085082 aataaagcatctattatagaattgtaagtaagtatattaggtggtacacctctatcatgcatct 29085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 29348433 - 29348598
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| |||||| |||| |||| | || || |  |||||||  || ||||| || ||||||||||||||||  ||||||||||||    
T  29348433 tccatcaataagaatagtgtatgtgtacatatctggttgaattccttcatctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttg 29348532  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  ||||||||||||||||||||| ||||| || ||  ||||||||||| |||||||    
T  29348533 cataaagcatccaatatagaattgtaagtaattttatcatgtggtacacctctatcatgcatctca 29348598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 278
Target Start/End: Complemental strand, 29889894 - 29889731
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||| |||||||||| ||| || | ||||||| | |||| ||||||||| ||||| ||| | ||||||||||  |||||||  |||||| |||||    
T  29889894 tccatcaataagaatagtgtatgtttacacatttggttgaatactctggtctttaaatttcgttgacaatgcaattgttttgtcaacctgatgggttttg 29889795  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 278  Q
    |||||||||| |||||||||||||||||| | ||||| |||| ||  ||||||||||| |||||    
T  29889794 cataaagcatctaatatagaattgtaagtgactatattaggtggtacacctctatcatgcatct 29889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 29898168 - 29898076
Alignment:
Q  188 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||| |||| |||||||||| |||| ||||||||||||||| |||||||    
T  29898168 attgccttgtcaacctgatggtttttgcataaagcattcaatatagaactgtacgtaattatattaggtggttgacctctatcatgcatctca 29898076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 29946579 - 29946444
Alignment:
Q  137 gtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaat 236  Q
    ||||| ||| ||||| | ||| |||||||||| | ||||||||| ||| ||||||||||||||| || || ||| ||||||||| |||  |||||||| |    
T  29946579 gtgtacatacttggttgaatatcctggtctttaagttttgttaaaaatacaattgccttgtcaacatcatagttcttgcataaaacatccaatatagagt 29946480  T
Q  237 tgtaagtaattatatcaggtagttgacctctatcat 272  Q
    ||||||||||||||| |||| |||||||||||||||    
T  29946479 tgtaagtaattatattaggtggttgacctctatcat 29946444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30061581 - 30061705
Alignment:
Q  1 tctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtc---cttcattttt 97  Q
    |||||||||||||||  | |||||||||||||||| ||||| |||||||||| ||| |||  |||||||||||| ||||||||||||   | ||||||||    
T  30061581 tctcttcgccttatcaatttcatttttatcaaacaaagaacatataattatttcgttagttgcagcatttggattgcaattattgtccgtcgtcattttt 30061680  T
Q  98 gatagcaaagccaaggctccatcaa 122  Q
    ||||||| |||||||||| ||||||    
T  30061681 gatagcatagccaaggcttcatcaa 30061705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 29099465 - 29099344
Alignment:
Q  157 accctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggt 256  Q
    ||||| |||||| ||||| ||||| ||||||||||| |||||||  |||||| ||||||||||||||| |||||||||||||||||||  ||||| ||||    
T  29099465 acccttgtctttaaatttcgttaacaatgcaattgctttgtcaacttgatgggttttgcataaagcatctaatatagaattgtaagtacatatattaggt 29099366  T
Q  257 agttgacctctatcattcatct 278  Q
     ||  ||||||||||| |||||    
T  29099365 ggtacacctctatcatgcatct 29099344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 29366317 - 29366421
Alignment:
Q  176 gttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattca 275  Q
    ||||| || ||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||| ||||| || ||  ||||||||||| ||    
T  29366317 gttaacaacgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaattgtaagtaattttatcatgtggtacacctctatcatgca 29366416  T
Q  276 tctca 280  Q
    |||||    
T  29366417 tctca 29366421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 29876932 - 29876824
Alignment:
Q  172 ttttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatca 271  Q
    |||| ||||||||||||| | ||| |||| ||||||  |||||||||||||||  ||||||||||||||||||||||||| |||| |||| |||||||||    
T  29876932 ttttcttaataatgcaatcgtcttctcaacatgatgaattttgcataaagcatacaatatagaattgtaagtaattatattaggtggttggcctctatca 29876833  T
Q  272 ttcatctca 280  Q
    | |||||||    
T  29876832 tgcatctca 29876824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 30999838 - 30999938
Alignment:
Q  180 ataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctc 279  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||  ||||||||| ||||| ||| ||||| |||| ||||||||||||||| ||||||    
T  30999838 ataatgcaattgcctggtcaacacgatggtttttgcataaagcatccaatatagaactgtaaataactatattaggtggttgacctctatcatgcatctc 30999937  T
Q  280 a 280  Q
    |    
T  30999938 a 30999938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 29949732 - 29949860
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||||||  || ||||||| ||| || ||||||||  | || || |||||||| |  ||| ||||||||||||| ||||||||||  ||||||||||||    
T  29949732 tccatcaacaagtatagtgtatgtatacatatttggctgaattccttggtcttttatcttttttaataatgcaatcgccttgtcaacctgatggtttttg 29949831  T
Q  215 cataaagcatttaatatagaattgtaagt 243  Q
    |||||||||| ||||| ||||||||||||    
T  29949832 cataaagcatctaataaagaattgtaagt 29949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 29867053 - 29866938
Alignment:
Q  7 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaa 106  Q
    ||||||||| || |||| |||||||||||||||||| || |||||| | ||||| |  ||||||||| ||||| ||||||| ||||||||||| | ||||    
T  29867053 cgccttatcattttcatctttatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaa 29866954  T
Q  107 gccaaggctccatcaa 122  Q
    ||||| ||| ||||||    
T  29866953 gccaatgcttcatcaa 29866938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 24271853 - 24271947
Alignment:
Q  186 caattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||||||||||  |||||||||||||||||| |||  ||||||||| |||| || |||||||||||| |||| |||| ||||| |||||||    
T  24271853 caattgccttgtcaacctgatggtttttgcataaatcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatctca 24271947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 30149648 - 30149526
Alignment:
Q  158 ccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggta 257  Q
    ||||||||||| |  ||| ||||||||||||||||| ||||||  |||||||||||||| ||  |||  |||| |||||||||||| ||||| || | |     
T  30149648 ccctggtctttgatcttttttaataatgcaattgccctgtcaacctgatggtttttgcacaatccatcaaataaagaattgtaagtgattatgtcggttg 30149549  T
Q  258 gttgacctctatcattcatctca 280  Q
    ||||||||||||||| |||||||    
T  30149548 gttgacctctatcatgcatctca 30149526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 25451270 - 25451117
Alignment:
Q  127 aatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcattt 226  Q
    |||||||| |||||| | ||||||| | ||||||| |||||| |||| | | |||||| ||||||| |  ||||  ||||| |||||  |||||||||      
T  25451270 aatagtgtatgtgtacacatttggttgaatacccttgtctttaaattctttaaataattcaattgcttcttcaacctgatgttttttcaataaagcatcc 25451171  T
Q  227 aatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||| ||||||||| |||||  ||| ||||||||||||||| |||||||    
T  25451170 aatatagaactgtaagtaaatatatttggtggttgacctctatcatgcatctca 25451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 29887701 - 29887586
Alignment:
Q  7 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaa 106  Q
    ||||||||| || ||||  ||||||||||||||||| || |||||| | ||||| |  ||||||||| ||||| ||||||| ||||||||||| | ||||    
T  29887701 cgccttatcattttcatcattatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaa 29887602  T
Q  107 gccaaggctccatcaa 122  Q
    ||||| ||| ||||||    
T  29887601 gccaatgcttcatcaa 29887586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 16702057 - 16702123
Alignment:
Q  182 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaatta 248  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||||||||||| ||||    
T  16702057 aatgcaattgccttgtcaacatgatggtttttacataaagcatgtaataaggaattgtaagtgatta 16702123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 29835600 - 29835504
Alignment:
Q  26 ttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaagccaaggctccatcaa 122  Q
    ||||||||||||||||| || |||||| | ||||| |  ||||||||| ||||| ||||||| ||||||||||| | ||||||||| ||| ||||||    
T  29835600 ttatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaagccaatgcttcatcaa 29835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 29894957 - 29894842
Alignment:
Q  7 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaa 106  Q
    ||||||||| || |||| |||||||||||| ||||| || |||||| | ||||| ||||||| ||||  |||| ||||||| ||||||||||| | ||||    
T  29894957 cgccttatcattttcatctttatcaaacagggaacggatgattatttcataagttacagcatctggaatgcaactattgtctttcatttttgacaacaaa 29894858  T
Q  107 gccaaggctccatcaa 122  Q
    | ||| ||| ||||||    
T  29894857 gtcaatgcttcatcaa 29894842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 29953542 - 29953657
Alignment:
Q  128 atagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcattta 227  Q
    ||||||| ||| || ||||||||  | || || ||||||||||  ||  ||||||||||||| ||||||||||  |||||||||||||| |||||||  |    
T  29953542 atagtgtatgtatacatatttggctgaatcccttggtctttcatcttctttaataatgcaatcgccttgtcaacctgatggtttttgcacaaagcatcca 29953641  T
Q  228 atatagaattgtaagt 243  Q
    ||| ||||||||||||    
T  29953642 ataaagaattgtaagt 29953657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 24271799 - 24271857
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaatt 173  Q
    ||||||||| |||||||||| |||| | ||||||||||| |||||||||||||||||||    
T  24271799 tccatcaataagaatagtgtatgtgaacatatttggtcgaataccctggtctttcaatt 24271857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 30053543 - 30053442
Alignment:
Q  163 gtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttga 262  Q
    ||||||||  || ||||| || ||||||||||||||||  |||||||||||||| ||  ||| ||||| |||||||||||| ||||||| || | |||||    
T  30053543 gtctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttgcacaatccatataataaagaattgtaagtgattatattagctggttga 30053444  T
Q  263 cc 264  Q
    ||    
T  30053443 cc 30053442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 24271559 - 24271651
Alignment:
Q  7 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttga 99  Q
    ||||||||| || ||||  ||||||||||||||||| || |||||| | ||||| ||||||||||||  ||||  |||||| |||||||||||    
T  24271559 cgccttatcattttcatcgttatcaaacagagaacggatgattatttcataagttacagcatttggaatgcaacaattgtctttcatttttga 24271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 29912126 - 29912051
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaa 200  Q
    ||||| |||| |||||  |||| |||||| ||||| ||| ||||||||||||||||||||| |||||| |||||||    
T  29912126 agaatggtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgtaattgctttgtcaa 29912051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 29914146 - 29914071
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaa 200  Q
    |||||||||| |||||| | | ||||| | |||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  29914146 agaatagtgtatgtgtacacacttggttgaataccctggtctttaaatttcgttaacaatgcaattgctttgtcaa 29914071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 30126650 - 30126765
Alignment:
Q  7 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaa 106  Q
    ||||||||| || |||| |||||||||||||||||| || |||||| | ||||| ||| | ||||||  |||| ||||||| ||||||| | | | ||||    
T  30126650 cgccttatcattttcatctttatcaaacagagaacggatgattatttcataagttacaacgtttggaatgcaactattgtctttcatttctaacaacaaa 30126749  T
Q  107 gccaaggctccatcaa 122  Q
    ||||| ||| ||||||    
T  30126750 gccaatgcttcatcaa 30126765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 15727090 - 15727152
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 243  Q
    |||| |||||||||||||||  |||||||||||||||||||||| || ||  |||||||||||    
T  15727090 taatacaattgccttgtcaacgtgatggtttttgcataaagcatctattaacgaattgtaagt 15727152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 30135250 - 30135124
Alignment:
Q  155 ataccctggtctttcaattttgttaataatgcaattgccttgtcaata-tgatggtttttgcataaagcatttaatatagaattgtaagtaattatatca 253  Q
    ||||| |||||||| |  || ||||||||||  |||||||||||||   |||||||||||||| |||||||  |||| |||||||||||| || | || |    
T  30135250 ataccttggtctttgatcttcgttaataatgtgattgccttgtcaaacctgatggtttttgcacaaagcatccaataaagaattgtaagtgatcacatta 30135151  T
Q  254 ggtagttgacctctatcattcatctca 280  Q
    |   |||||||||| |||| |||||||    
T  30135150 gcaggttgacctctttcatgcatctca 30135124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 24739103 - 24739195
Alignment:
Q  188 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||||||||  |||||||||||||| |||||||  ||||  ||||||||||| || | |||||   |||| ||||||| || |||||||    
T  24739103 attgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatcacatcagcaggttggcctctattatgcatctca 24739195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 4301 - 4136
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 214  Q
    ||||| ||| |||||||||| |||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||    |||||||||||    
T  4301 tccattaataagaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgccttgtcacctggatggtttttg 4202  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||  |||| |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  4201 cataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctca 4136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 22497 - 22342
Alignment:
Q  125 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    ||||| |||| |||||  |||| |||||| ||||| ||| ||||||||||||||||||||| |||||| ||||| | |||||| ||||||||||||||||    
T  22497 agaatggtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgtaattgctttgtccacatgatgttttttgcataaagcat 22398  T
Q  225 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
      |||||||||||||||||||||||||||||| |||| |||| || || |||||||    
T  22397 ccaatatagaattgtaagtaattatatcaggttgttgccctcgataatgcatctca 22342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 24219116 - 24219234
Alignment:
Q  161 tggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagtt 260  Q
    |||||||| | ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||| |||| |||    
T  24219116 tggtctttaagttttgttaacaattcaattgccttgtcaacatgatggtttttgcataaagcatccaataaagaattgtaagtaattatattaggtggtt 24219215  T
Q  261 gacctctatcattcatctc 279  Q
    |||||||||||| ||||||    
T  24219216 gacctctatcatgcatctc 24219234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 24226911 - 24226818
Alignment:
Q  188 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctcac 281  Q
    |||||||||||||  |||||||||||||| ||  ||| ||||| |||||||||||| ||||| | || | ||||||||||||||| ||||||||    
T  24226911 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaagtgattatgttagctggttgacctctatcatgcatctcac 24226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 33998037 - 33997967
Alignment:
Q  182 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatc 252  Q
    |||| |||||||| ||| | |||||| ||||||||||||||||  |||| |||||| ||||| ||||||||    
T  33998037 aatgtaattgcctggtcgagatgatgatttttgcataaagcatgcaataaagaattataagtgattatatc 33997967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 16351214 - 16351086
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaa-taatgcaattgccttgtcaatatgatggttttt 213  Q
    ||||||||| || ||| ||| |||| | ||||||||| | || || || ||||| |||||| |||| ||||||||| |||||||||| ||| ||||||||    
T  16351214 tccatcaataagtatattgtatgtgcacatatttggttgaatgccatgttcttt-aattttcttaactaatgcaatagccttgtcaacatgttggttttt 16351116  T
Q  214 gcataaagcatttaatatagaattgtaagt 243  Q
    ||| ||| ||| ||  | ||||||||||||    
T  16351115 gcagaaaacatctatcaaagaattgtaagt 16351086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 15062737 - 15062868
Alignment:
Q  141 aaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgta 240  Q
    |||||| |||| | |||||||  ||||| | ||||||||||||  |||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||    
T  15062737 aaatatctggttgaatacccttctctttaatttttgttaataacacaattgccttatcaacatgattgtttttgcatatagcatctaatatagaattgta 15062836  T
Q  241 agtaattatatcaggtagttgacctctatcat 272  Q
    ||||||||||| || | |||||||||||||||    
T  15062837 agtaattatattagatggttgacctctatcat 15062868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 10130246 - 10130134
Alignment:
Q  170 aattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctat 269  Q
    |||||| |||| ||||| ||||| ||||||| ||| || |||| |||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||    
T  10130246 aattttcttaacaatgcgattgctttgtcaacatggtgattttggcataaagcattcaataaagaattgtaagtaattatattaggttgttgacctctat 10130147  T
Q  270 cattcatctcact 282  Q
    ||  |||||||||    
T  10130146 cagacatctcact 10130134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 17251411 - 17251312
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||||||||| ||||  |||||| ||||||| ||||||| ||  | |||| ||||||| |||| || |||| ||||||||||||||| |||||||    
T  17251411 taatgcaattgccttatcaacttgatggcttttgcacaaagcatctatcaaagaagtgtaagttattacattaggtggttgacctctatcatgcatctca 17251312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 19490374 - 19490249
Alignment:
Q  155 ataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcag 254  Q
    ||||| || ||||||| |||  ||| |||||| |||||||||||  | |||||  |||| |||||||||| ||||| |||||| ||||| |||| ||| |    
T  19490374 ataccttgatctttcattttgcttagtaatgctattgccttgtcggtttgatgacttttacataaagcatctaataaagaattataagttattacatcgg 19490275  T
Q  255 gtagttgacctctatcattcatctca 280  Q
    || | ||||||||||||  |||||||    
T  19490274 gtggctgacctctatcaagcatctca 19490249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 41316358 - 41316274
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcattta-atatagaattgtaagtaattatatcaggtagttgacc 264  Q
    ||||||||| |||||||||| ||||| | ||||||||||||||| || ||| |||| |||||||   |||||||||| |||||||    
T  41316358 taatgcaatagccttgtcaagatgattgcttttgcataaagcatctatataaagaactgtaagtggatatatcaggtggttgacc 41316274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 41198828 - 41198768
Alignment:
Q  192 ccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatc 252  Q
    ||||||||| |||||||||||| |||||||||| |||||  |||||| || | ||||||||    
T  41198828 ccttgtcaacatgatggtttttacataaagcatgtaataaggaattgcaactgattatatc 41198768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 53532 - 53596
Alignment:
Q  216 ataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  53532 ataaagcatttaatatagaattgtaagtaattatattaggtggttgacctctatcatgcatctca 53596  T

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Target: scaffold0572 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 3331 - 3232
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| | ||||||| ||||||  |||||||    
T  3331 taatgcaatagccttgtcaacatgatggtttttgcataaagcatctattaatgaattgtaagtgattatatcagctggttgaccactatcacgcatctca 3232  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 3643201 - 3643073
Alignment:
Q  115 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaa-taatgcaattgccttgtcaatatgatggttttt 213  Q
    ||||||||| || ||| ||| |||||| ||| ||||| | || ||||||||||| |||||| |||| ||||||||| || ||||||||||||||||||||    
T  3643201 tccatcaataagtatattgtatgtgtacatacttggttgaatgccctggtcttt-aattttcttaactaatgcaatagctttgtcaatatgatggttttt 3643103  T
Q  214 gcataaagcatttaatatagaattgtaagt 243  Q
    ||||||| ||| ||  | ||||||||||||    
T  3643102 gcataaaacatctatcaaagaattgtaagt 3643073  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 137537 - 137389
Alignment:
Q  116 ccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaa-taatgcaattgccttgtcaatatgatggtttttg 214  Q
    |||||||| || ||| ||| |||||| ||||||||| | || || |||||||| |||||| || | ||||||||| || ||||||| ||||| |||||||    
T  137537 ccatcaataagtatattgtatgtgtacatatttggttgaatgccttggtcttt-aattttcttgactaatgcaatagctttgtcaagatgattgtttttg 137439  T
Q  215 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 264  Q
    |||||||||| || || |||| |||| |||| ||| |||||| |||||||    
T  137438 cataaagcatctattaaagaactgtaggtaaatatgtcaggtggttgacc 137389  T

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Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 121382 - 121478
Alignment:
Q  182 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 278  Q
    |||||||||||||||||||  ||||| ||||||||||||||||  ||||  |||||||| || || ||||  |   ||||||||||||||| |||||    
T  121382 aatgcaattgccttgtcaacttgatgatttttgcataaagcatgcaataaggaattgtatgtgataatattggcaggttgacctctatcatgcatct 121478  T

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Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 104652 - 104722
Alignment:
Q  194 ttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 264  Q
    ||||||| ||||| ||||||||||||||||| || || |||| ||||||||| ||| | |||| |||||||    
T  104652 ttgtcaagatgattgtttttgcataaagcatctattaaagaactgtaagtaaatatgttaggtggttgacc 104722  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 126024 - 126086
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 243  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| || ||  |||||||||||    
T  126024 taatgcaatagccttgtcaatctgatggtttttgcataaagcatctattaaggaattgtaagt 126086  T

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Target: scaffold0429 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 6294 - 6211
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 264  Q
    |||| |||| |||||||||| |||||||||||||||||| |||| || || ||||||||||||   ||| |||||| |||||||    
T  6294 taatacaatagccttgtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtgcatatgtcaggtggttgacc 6211  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 47804 - 47903
Alignment:
Q  181 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    ||||||||| ||||||||||  |||| |||||||||||||| ||||| || |||||||||||| | |||||  ||| |||| ||  |||||| |||||||    
T  47804 taatgcaatagccttgtcaacctgatagtttttgcataaagaatttattaaagaattgtaagtgaatatattgggtggttggccattatcatgcatctca 47903  T

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Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 43201 - 43269
Alignment:
Q  196 gtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 264  Q
    ||||| |||||||||||||||||| |||| || || ||||||||||||   ||| |||||| |||||||    
T  43201 gtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtgcatatgtcaggttgttgacc 43269  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 44262489 - 44262556
Alignment:
Q  176 gttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 243  Q
    ||||||||||  |||||||||||||  |||||||||||||| |||||||  ||||  |||||||||||    
T  44262489 gttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 44262556  T

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Target: scaffold0654 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 1122 - 1183
Alignment:
Q  182 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 243  Q
    |||||||||||||||||||  ||||||||||| |||||||| | ||| |  |||||||||||    
T  1122 aatgcaattgccttgtcaacttgatggtttttacataaagcgtgtaagaaggaattgtaagt 1183  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 9782655 - 9782594
Alignment:
Q  163 gtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 224  Q
    ||||||||  |||||||| || ||||||||||||||||  |||||| ||||||| |||||||    
T  9782655 gtctttcatctttgttaacaacgcaattgccttgtcaacctgatggattttgcacaaagcat 9782594  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 1197 - 1293
Alignment:
Q  182 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 278  Q
    |||||||||||||||||||  ||||| ||||| |||||||| | ||| |  ||||||||||| || | ||| |   ||||||||||||||| |||||    
T  1197 aatgcaattgccttgtcaacttgatgatttttacataaagcgtgtaagaaggaattgtaagtgatcacatcggcaggttgacctctatcatgcatct 1293  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 43777 - 43869
Alignment:
Q  188 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 280  Q
    |||||||||||||  |||||||||||||| ||  ||| ||||| |||| ||||||| || || |  | | ||||||||||||||| |||||||    
T  43777 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaactgtaagtgataatgttcgctggttgacctctatcatgcatctca 43869  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 31220 - 31264
Alignment:
Q  186 caattgccttgtcaatatgatggtttttgcataaagcatttaata 230  Q
    |||| |||||||||| |||||||||||| |||||||||| |||||    
T  31220 caatggccttgtcaacatgatggtttttacataaagcatgtaata 31264  T

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