View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20951_low_2 (Length: 436)
Name: NF20951_low_2
Description: NF20951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20951_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 34161018 - 34161436
Alignment:
| Q |
1 |
actaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctataggattccaacaccactcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161018 |
actaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctataggattccaacaccactcata |
34161117 |
T |
|
| Q |
101 |
atttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgatta |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34161118 |
acttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctactttataatacctaaccattagtctaatatgatta |
34161217 |
T |
|
| Q |
201 |
gtatggggaaatacccttacctctaagtgttttccttatgtgtttttattttgtggagattctacagccaactccacgaaattgggcacggtgaaatgag |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34161218 |
gtatggggaaatacccttacctctaagtgctttccttatgtgtttttattttgtggagattctacagccaactccacgaaattgggcacggtgaagtgag |
34161317 |
T |
|
| Q |
301 |
ttgtttatgaagcttcccagaaggtgaatattcttcaaataaaagagtctattattagaacataattgaattgaaggtatggcaggaaaggtagtggagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34161318 |
ttgtttatgaagcttcccagaaggtgaatattcttcaaataaaagagtctattattagaacataattgaattgaaattatggcaggaaaggtagtggagt |
34161417 |
T |
|
| Q |
401 |
tattcttacctcaaacttg |
419 |
Q |
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||||||||||||||||||| |
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| T |
34161418 |
tattcttacctcaaacttg |
34161436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 31979681 - 31979504
Alignment:
| Q |
1 |
actaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctataggattccaacaccactcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31979681 |
actaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctctaggattccaacaccactcata |
31979582 |
T |
|
| Q |
101 |
atttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacct |
178 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31979581 |
atttactaattaaatttatagttaaatttctactctctttaaacgattatgaatcataatttctactctataatacct |
31979504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 25673228 - 25673134
Alignment:
| Q |
128 |
ttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgattagtatggggaaatacccttacct |
222 |
Q |
| |
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||||| ||| |||||||| |||||||||| | |||||||| |||||| |||||||||||||||||||||| |||||| |||| | ||||||||| |
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| T |
25673228 |
ttcttttctttttaaacggttatgaatcatactttctactctataatatctaaccattagtctaatatgataagtatgaggaagtgcccttacct |
25673134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 14490591 - 14490473
Alignment:
| Q |
104 |
tactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgattagta |
203 |
Q |
| |
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|||||| |||| ||||| || |||||||| ||||||||||| |||||||||| | |||||||| | |||| |||||||||||| ||||||||| |||| |
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| T |
14490591 |
tactaaataaaattatatttcaatttctttcctctttaaacggttatgaatcatactttctactctacaatatctaaccattagtttaatatgataagta |
14490492 |
T |
|
| Q |
204 |
tggggaaatacccttacct |
222 |
Q |
| |
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||| ||| | ||||||||| |
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| T |
14490491 |
tggagaagtgcccttacct |
14490473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 43656485 - 43656365
Alignment:
| Q |
102 |
tttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgattag |
201 |
Q |
| |
|
|||||||| |||| |||| || |||||||| |||||||||||| ||||| |||| | |||||||| |||||| ||||||||||| ||||||| | || |
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| T |
43656485 |
tttactaaataaaagtatatttgaatttcttttctctttaaacggttatggatcatactttctactctataatatataaccattagtttaatatgttaag |
43656386 |
T |
|
| Q |
202 |
tatggggaaatacccttacct |
222 |
Q |
| |
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||||||||| | ||||||||| |
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| T |
43656385 |
tatggggaagtgcccttacct |
43656365 |
T |
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