View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20951_low_5 (Length: 299)
Name: NF20951_low_5
Description: NF20951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20951_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 8375873 - 8376138
Alignment:
| Q |
16 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
115 |
Q |
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| T |
8375873 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
8375972 |
T |
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| Q |
116 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
215 |
Q |
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| T |
8375973 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacacatttgttgcttggtgatgcagag |
8376072 |
T |
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| Q |
216 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggttttt |
281 |
Q |
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| T |
8376073 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggttttt |
8376138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 7095929 - 7095664
Alignment:
| Q |
16 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
115 |
Q |
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| T |
7095929 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagagggctga |
7095830 |
T |
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| Q |
116 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
215 |
Q |
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| T |
7095829 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagat |
7095730 |
T |
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| Q |
216 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggttttt |
281 |
Q |
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| T |
7095729 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggttttt |
7095664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 15420472 - 15420735
Alignment:
| Q |
18 |
cagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatt |
117 |
Q |
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|||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||| | ||||||||||||||||||| |
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| T |
15420472 |
cagagagaagatagggcagcagattcaaggggcttggctgattttcgtcgtcacaatccaccccaattccacggggaagtggacccagagaaggctgatt |
15420571 |
T |
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| Q |
118 |
tgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagta |
217 |
Q |
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| T |
15420572 |
tgtggctacaagaagttgaaaagattttgaatgtgattaactgtcctgaagattctaaggtgaaatatgccacttatctgttgcttggtgatgcagagta |
15420671 |
T |
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| Q |
218 |
ttggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggttttt |
281 |
Q |
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||||||||||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
15420672 |
ttggtggaaaaatgccaaaagtatgttagagaatgctcaagaggaaatcacttgggaggttttt |
15420735 |
T |
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