View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20951_low_7 (Length: 285)
Name: NF20951_low_7
Description: NF20951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20951_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 32273139 - 32273016
Alignment:
| Q |
71 |
tgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgcatgttgcttcgagactcattcctatttccttgttccctc |
170 |
Q |
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| T |
32273139 |
tgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgcatgttgcttcgagactcattcctatttccttgttccctc |
32273040 |
T |
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| Q |
171 |
agaaacagaaacaagtacaacgag |
194 |
Q |
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| T |
32273039 |
agaaacagaaacaagtacaacgag |
32273016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 32273193 - 32273162
Alignment:
| Q |
19 |
agggttgataatactattaattgttttatgac |
50 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32273193 |
agggttgataatactattaattgttttatgac |
32273162 |
T |
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