View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20952_high_4 (Length: 407)

Name: NF20952_high_4
Description: NF20952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20952_high_4
NF20952_high_4
[»] chr4 (1 HSPs)
chr4 (17-407)||(55274643-55275045)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 55274643 - 55275045
Alignment:
Q  17 attattgatgagaaataatgcaaggttctttagttgaagcagaagaagaagtagaggatgaagaacttaacaaccacacactccttttcaattccaatgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55274643 attattgatgagaaataatgcaaggttctttagttgaagcagaa---gaagtagaggatgaagaactgaacaaccacacactccttttcaattccaatgg 55274739  T
Q  117 cgaattttaacaatctcatccttctcttttccatcctctcgttttccttcctctccatttccatcccaggtataatcaaccaattttctcttcattcaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  55274740 cgaattttaacaatctcatccttctcttttccatcctctcgttttccttcctctccatttccatcccaggtataatcaactaattttctcttcattcatt 55274839  T
Q  217 --tttctctcttaatcaaacaataatcaac-------------ttttttattctttgcagttgaaagttcacatttccagataaaacaagaaaatgaaga 301  Q
       || ||||||||||||||||||||||||             |||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  55274840 caattttctcttaatcaaacaataatcaactcttttttttttttttttttttttttgcaggtgaaagttcacatttccagataaaactagaaaatgaaga 55274939  T
Q  302 acaagaaagaggaccgttcattggtgttaacattggaacagacgtagaaaacatggcatcaacttcagacatagtttcatttctcaagttacaaaaaata 401  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55274940 acaagaaagaggacctttcattggtgttaacattggaacagacgtagaaaacatggcatcaacttcagacatagtttcatttctcaagttacaaaaaata 55275039  T
Q  402 acacat 407  Q
    ||||||    
T  55275040 acacat 55275045  T

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