View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20952_high_6 (Length: 390)
Name: NF20952_high_6
Description: NF20952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20952_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 6412600 - 6412207
Alignment:
| Q |
1 |
ggatcatccttgttaggtcatgactagtgatgaaaatttctctaacttatcaatatctcactccaaatttcatttctcatactctctgttcatcttgact |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412600 |
ggatcatccttgttaggtcattactagtgatgaaaatttctctagcttatcaatatctcactcgaaatttcatttctcatactctctgttcatcttgact |
6412501 |
T |
|
| Q |
101 |
tatagttaaccaggttttcaaag--------------------aactttgtcacaaccgcctcctcattattgatgagcgcaacatccgtcacatgaata |
180 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412500 |
tataattaaccaggttttcaaaggacccgagcttatctttgagaactttgtcacaactgcctcctcattattgatgagcgcaacatccgtcacatgaata |
6412401 |
T |
|
| Q |
181 |
atgatgctacttgttgtcaatgtggtgctaaaaaagaaacaattatgcatttgcttagagattgttatgacatccaagatgtttgggatccttctattaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412400 |
atgatgctacttgttgtcaatgtggtgctaaaaaagaaacaattatgcatttgcttagagattgttatgacatccaagatgtttgggatccttctattaa |
6412301 |
T |
|
| Q |
281 |
gtaggagcattgggctaaattatttagcttaaatctatatgatttgttgcatttgaatatctccttaaaagacaccggtatttctactttaact |
374 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6412300 |
gtaggagcattgggctaaattattttgcttaaatctatatgatttgttgcatttgaatatctccttaaaagacactggtatttctactttaact |
6412207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 38002360 - 38002450
Alignment:
| Q |
155 |
tgagcgcaacatccgtcacatgaataatgatgctacttgttgtcaatgtggtgctaaaaaagaaacaattatgcatttgcttagagattgt |
245 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| |||||| | |||||||||| | | ||||||||||||||||| |||||||||||| |
|
|
| T |
38002360 |
tgagcgcagaatccgtcacatgactgatgatgttacttgagtttgatgtggtgcttaggaggaaacaattatgcatttacttagagattgt |
38002450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University