View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20952_high_8 (Length: 285)

Name: NF20952_high_8
Description: NF20952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20952_high_8
NF20952_high_8
[»] chr6 (4 HSPs)
chr6 (178-273)||(16985128-16985223)
chr6 (18-116)||(16984970-16985067)
chr6 (184-241)||(16870352-16870409)
chr6 (184-241)||(17095676-17095733)
[»] chr3 (1 HSPs)
chr3 (213-241)||(38941768-38941796)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 16985128 - 16985223
Alignment:
Q  178 ccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgccggtctttaccacctctcttgtatctctgctcc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||    
T  16985128 ccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgctggtcttcacaacctctcttgtatctcttctcc 16985223  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 16984970 - 16985067
Alignment:
Q  18 aataggttttttgattataagtctcccatgctgatatgatattctctgcacatattaattgttcaatataagtttaaaatca---catataatttgatat 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||||   |||||||||||||||    
T  16984970 aatagattttttgattataagtctcccatgctgatatgatattctctgcacat----attgttcaatataagtctaaaatcacaccatataatttgatat 16985065  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 16870409 - 16870352
Alignment:
Q  184 aatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgcc 241  Q
    ||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||||    
T  16870409 aatgttggttttttatcagattccaaataaaattcaggaatgtgagctatcttatgcc 16870352  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 17095676 - 17095733
Alignment:
Q  184 aatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgcc 241  Q
    ||||||||||||||| ||| ||| || | ||||||||||||||||||||||| |||||    
T  17095676 aatgttggttttgcatcagtttccaattcaaattcaggaatgtgagctatctaatgcc 17095733  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 38941796 - 38941768
Alignment:
Q  213 aaattcaggaatgtgagctatcttatgcc 241  Q
    |||||||||||||||||||||||||||||    
T  38941796 aaattcaggaatgtgagctatcttatgcc 38941768  T

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