View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20952_low_10 (Length: 219)
Name: NF20952_low_10
Description: NF20952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20952_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30656671 - 30656468
Alignment:
| Q |
1 |
tttcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacc |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30656671 |
tttcaatgagaggtaataatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacc |
30656572 |
T |
|
| Q |
101 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagttgttatcaaaaggtgtaaaga---ataaagcagggaaacaagatgaatcagaaggatca |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
30656571 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagttgttatcaaaaggtgtaaagaataataaagcagggagacaagatgaatcagaaggatca |
30656472 |
T |
|
| Q |
198 |
agtg |
201 |
Q |
| |
|
|||| |
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|
| T |
30656471 |
agtg |
30656468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30689727 - 30689527
Alignment:
| Q |
1 |
tttcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacc |
100 |
Q |
| |
|
|||||||||||||| || |||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
30689727 |
tttcaatgagaggttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacc |
30689628 |
T |
|
| Q |
101 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagttgttatcaaaaggtgtaaagaataaagcagggaaacaagatgaatcagaaggatcaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30689627 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagatgttatcaaaaggtgtaaagaataaagcagggaaacaagatgaatcagaaggatcaagt |
30689528 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
30689527 |
g |
30689527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 30698611 - 30698410
Alignment:
| Q |
3 |
tcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30698611 |
tcaatgagaggtaataatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctg |
30698512 |
T |
|
| Q |
103 |
cacttgcactaaaagagaggcactatgaacaaagaaagttgttatcaaaaggtgtaaag---aataaagcagggaaacaagatgaatcagaaggatcaag |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30698511 |
cacttgcactaaaagaaaggcactatgaacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaagatgaatcagagggatcaag |
30698412 |
T |
|
| Q |
200 |
tg |
201 |
Q |
| |
|
|| |
|
|
| T |
30698411 |
tg |
30698410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30671832 - 30671629
Alignment:
| Q |
1 |
tttcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
30671832 |
tttcaatgagaggtaataatgccgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacc |
30671733 |
T |
|
| Q |
101 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagttgttatcaaaaggtgtaaag---aataaagcagggaaacaagatgaatcagaaggatca |
197 |
Q |
| |
|
|||||||||||| || ||||| |||| |||||||||||| |||||||||||| | |||| ||||||||||||||||||||| ||||||| |||||| |
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|
| T |
30671732 |
tgcacttgcactcaaggagagacactgtgaacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaagatcaatcagagggatca |
30671633 |
T |
|
| Q |
198 |
agtg |
201 |
Q |
| |
|
|||| |
|
|
| T |
30671632 |
agtg |
30671629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 30718770 - 30718622
Alignment:
| Q |
1 |
tttcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacc |
100 |
Q |
| |
|
|||||||||||||| || |||| |||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
30718770 |
tttcaatgagaggttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacc |
30718671 |
T |
|
| Q |
101 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagttgttatca |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30718670 |
tgcacttgcactaaaagagaggcactatgaacaaagaaagatgttatca |
30718622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30710496 - 30710370
Alignment:
| Q |
1 |
tttcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30710496 |
tttcaatgagaggtaataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacc |
30710397 |
T |
|
| Q |
101 |
tgcacttgcactaaaagagaggcacta |
127 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
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|
| T |
30710396 |
tgcacttgcactcaaagagagacacta |
30710370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 56539247 - 56539332
Alignment:
| Q |
1 |
tttcaatgagaggtaataatgccgtgctcaacttttctgtccaaaaggtcaaagaatctttgcaagagattcaatatgattgcaga |
86 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||| |
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|
| T |
56539247 |
tttcattgagaggtaataatgttgtgctcaatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcaga |
56539332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 56539349 - 56539407
Alignment:
| Q |
117 |
gagaggcactatgaacaaagaaagttgttatcaaaaggtgtaaagaataaagcagggaa |
175 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||| ||||||||||| | |||||||||||| |
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|
| T |
56539349 |
gagagacactgtgaacaaagaaagatgttatccaaaggtgtaaatagtaaagcagggaa |
56539407 |
T |
|
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