View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20952_low_3 (Length: 419)
Name: NF20952_low_3
Description: NF20952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20952_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 135 - 408
Target Start/End: Original strand, 6350621 - 6350898
Alignment:
| Q |
135 |
aagagggaaaacgatggagaaaatggaatttctttattaccaactctctctttttaacctttgttgtaaccgttaagaatggaagaagaagaaagattac |
234 |
Q |
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| T |
6350621 |
aagagggaaaacgatggagaaaatggaatttctttattactaactctctctctttaacctctgttgtaaccgttaagaatggaagaagaagaaagattac |
6350720 |
T |
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| Q |
235 |
ttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagttatgatagagtgcagttagtc |
332 |
Q |
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| T |
6350721 |
ttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgttatggcagttagagagagttatgatagagtgcagttagtc |
6350820 |
T |
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| Q |
333 |
tatgatagctaa--gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctcttcat |
408 |
Q |
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| T |
6350821 |
tatggtaggtaaacgcttaagcattttaccaaactcagttagtgaaataatgaattttccctcttctattctcttcat |
6350898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 35081986 - 35082093
Alignment:
| Q |
216 |
gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagtta |
313 |
Q |
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| T |
35081986 |
gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagagagaacta |
35082085 |
T |
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| Q |
314 |
tgatagag |
321 |
Q |
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|||||||| |
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| T |
35082086 |
tgatagag |
35082093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 35084185 - 35084244
Alignment:
| Q |
345 |
gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctct |
404 |
Q |
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| T |
35084185 |
gcttaaccattgtaacaaactcggttagtgaaataatgaattttctctcttctattctct |
35084244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 11021815 - 11021744
Alignment:
| Q |
206 |
gttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccac |
277 |
Q |
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| T |
11021815 |
gttaagaatggaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccac |
11021744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 6290254 - 6290214
Alignment:
| Q |
206 |
gttaagaatggaagaagaagaaagattacttgagaagcaag |
246 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||| |
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| T |
6290254 |
gttaagaatggaagaagaaggaagattacttgaggagcaag |
6290214 |
T |
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