View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20952_low_7 (Length: 321)
Name: NF20952_low_7
Description: NF20952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20952_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 30698683 - 30698981
Alignment:
| Q |
1 |
ctcctcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatgatctttcttctctagtttgaaagttcttcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30698683 |
ctcctcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatgatctttcttctttagtttgaaagttcttcac |
30698782 |
T |
|
| Q |
101 |
tagttcatgatttggttcattttttgttggtccttgttggtcaaccatgtcaaaggaaagataatcatgaatattagggtcatgatgaaatggttcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30698783 |
tagttcatgatttggttcattttttgttggtccttgttggtcaaccatgtcaaaggaaagataatcatgaatattagggtcatgatgaaatggttcaaag |
30698882 |
T |
|
| Q |
201 |
agaatattagtaggatcttgttgcaacatttccaaatctgggttattgaagtaagagctagtcatcatatgcattaggaagaaagaggtttctgtttag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30698883 |
agaatattagtaggatcttgttgcaacatttccaaatctgggttattgaagtaagagctactcatcatatgcattaggaagaaagtggtttctgtttag |
30698981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 30718840 - 30719112
Alignment:
| Q |
1 |
ctcctcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatgatctttcttctctagtttgaaagttcttcac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | || |||| |
|
|
| T |
30718840 |
ctcctcttgttgtatctctaatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatgatctttcttctttaggttcagaattattcat |
30718939 |
T |
|
| Q |
101 |
tagttcatgatttggttcattttttgttggtccttgttggtcaaccatgtcaaaggaaagataatcatgaatattagggtcatgatgaaatggttcaaag |
200 |
Q |
| |
|
| || ||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30718940 |
tga---attatttggttcgtttttgtttggtccttgttggtcaaccatgtaaaaagaaagataatcatgaatataagggtcttgatgaaatggttcaaac |
30719036 |
T |
|
| Q |
201 |
agaatattagtaggatcttgttgcaacatttccaaatctgggttattgaagtaagagctagtcatcatatgcatta |
276 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
30719037 |
agaatattagtaagatcttgctgcaacatttccaaatctgggttatggaaaaaagagctactcatcgtatgcatta |
30719112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15815200 - 15815132
Alignment:
| Q |
1 |
ctcctcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatg |
69 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15815200 |
ctcctcttgctgtatctctgatttctgcagcaaatttcccccaaggtctcttcctcacacctatatatg |
15815132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30710566 - 30710635
Alignment:
| Q |
1 |
ctcctcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatga |
70 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |||||| |||| ||||| |||||||||||||| |
|
|
| T |
30710566 |
ctcctcttgttgtatctctgatttctgcagcatattttccccaacgtcttttcctaacacctatatatga |
30710635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 30656746 - 30656809
Alignment:
| Q |
6 |
cttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatg |
69 |
Q |
| |
|
|||||||| || || || ||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30656746 |
cttgttgtgtcccttatttctgcagcatatttcccccaaggtcttttcctcacacctatatatg |
30656809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30689797 - 30689867
Alignment:
| Q |
1 |
ctcctcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatgat |
71 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| | || ||||||||||| || || ||||||||||||||| |
|
|
| T |
30689797 |
ctcctcttgttgtgtctctgatctctgctgcatactttccccaaggtctttttcttacacctatatatgat |
30689867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 30671907 - 30671965
Alignment:
| Q |
6 |
cttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctat |
64 |
Q |
| |
|
|||||||| ||||| || ||||||||| |||||||||||||||| || || |||||||| |
|
|
| T |
30671907 |
cttgttgtgtctcttatttctgcagcatatttcccccaaggtctttttcttacacctat |
30671965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 56539156 - 56539091
Alignment:
| Q |
5 |
tcttgttgtatctctgatctctgcagcaaatttcccccaaggtctcttcctcacacctatatatga |
70 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||| |||||| | || || ||||||||||||||||| |
|
|
| T |
56539156 |
tcttgttgtgtctctgatctctgctgcatattttccccaaagactttttctcacacctatatatga |
56539091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 46625791 - 46625831
Alignment:
| Q |
29 |
agcaaatttcccccaaggtctcttcctcacacctatatatg |
69 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
46625791 |
agcaaatttcccccaaggtctttttctcgcacctatatatg |
46625831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University