View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20953_low_1 (Length: 434)
Name: NF20953_low_1
Description: NF20953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20953_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 2 - 418
Target Start/End: Original strand, 9881379 - 9881800
Alignment:
| Q |
2 |
ataggtatagtcggttgagtttgaatttcctatg------caattacgtcgttgtttatcttaaccgttagatcaagaaaagatggcctatatttcatct |
95 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9881379 |
ataggtatagtcggttgagtttggatttcctatgttcatgcaatcacgtcgttgtttatcttaaccgttagatcaagaaaagatggcccatatttcatct |
9881478 |
T |
|
| Q |
96 |
ttgcatttaaatttatataccaaagtcaaaatatgaaccgttcgatctgaatttaactattcaaattgtgtgaccgtttcaaacacacaagttcatgaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9881479 |
ttgcatttaaatttatataccaaagttaaaatatgaaccgttcgattttaatttaactattcaaattgtgtgaccgtttcaaacacataagttcatgaca |
9881578 |
T |
|
| Q |
196 |
acatgatatattaaataacccttttgataaaattgttctagaaagtagaaatctttccaaagttatatttaatgttgaatatccatcatgtgtcggttat |
295 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9881579 |
acatgatatattaaagaacccttttgataaaattgttctagaaagtagaaatctttccaaagttatatttaatgttgaatatccatcatgtgtcggttat |
9881678 |
T |
|
| Q |
296 |
atcttccctttacagataccaaagttagcatgcatatatccttgtaatgctttccaattacagataggaaagagtaatannnnnnnnaacaacacttaaa |
395 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
9881679 |
atcttccatttacagataccaaagttagcatgcatatatccttgtaatgctttccaattacagataggaaagagtaatattttttttaacaacactt-aa |
9881777 |
T |
|
| Q |
396 |
tggttggcatttactgtcaaaac |
418 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9881778 |
tggttggcatttactgtcaaaac |
9881800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University