View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_1 (Length: 1171)

Name: NF20954_high_1
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_1
NF20954_high_1
[»] chr5 (12 HSPs)
chr5 (158-737)||(41703717-41704314)
chr5 (765-1033)||(41703458-41703722)
chr5 (529-984)||(41467192-41467644)
chr5 (17-118)||(41704313-41704414)
chr5 (732-819)||(41506883-41506970)
chr5 (765-827)||(41513161-41513223)
chr5 (718-804)||(41497620-41497706)
chr5 (765-827)||(41522096-41522158)
chr5 (869-982)||(41513268-41513381)
chr5 (1130-1163)||(41703284-41703317)
chr5 (718-792)||(33077964-33078038)
chr5 (911-984)||(33078159-33078232)
[»] chr3 (1 HSPs)
chr3 (529-669)||(36467105-36467243)
[»] chr6 (1 HSPs)
chr6 (349-397)||(33826623-33826671)
[»] chr8 (1 HSPs)
chr8 (349-392)||(10908947-10908990)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 158 - 737
Target Start/End: Complemental strand, 41704314 - 41703717
Alignment:
Q  158 ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704314 ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg 41704215  T
Q  258 gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactactt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||    
T  41704214 gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaa-tagtaaccaatt 41704116  T
Q  358 -ttaacaaactctaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt 456  Q
      |||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704115 agtaactacttttaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt 41704016  T
Q  457 acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgtta---------------------tgtattatagtt 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||| ||    
T  41704015 acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactt 41703916  T
Q  536 tcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttgg-- 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||       ||||||||      
T  41703915 tcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata-------taccttggat 41703823  T
Q  634 --ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcga 731  Q
      |||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  41703822 atataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcga 41703723  T

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Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 765 - 1033
Target Start/End: Complemental strand, 41703722 - 41703458
Alignment:
Q  765 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga 864  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703722 aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga 41703623  T
Q  865 acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca 964  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703622 acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca 41703523  T
Q  965 gctggtccaaaaagagatatatatgttaatatttgccaaacatgataatactcaaacaaaaacttcaaa 1033  Q
    |||||||||| |||||    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41703522 gctggtccaacaagag----atatgtttatatttgccaaacatgataatactcaaacaaaaacttcaaa 41703458  T

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Target: chr5; HSP #3
Raw Score: 138; E-Value: 2e-71
Query Start/End: Original strand, 529 - 984
Target Start/End: Original strand, 41467192 - 41467644
Alignment:
Q  529 tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctac 628  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| | || |||    
T  41467192 tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttac 41467291  T
Q  629 cttggataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcat 728  Q
    ||| |||||||||||   ||||||||||||||| |||||||              || |||||| ||| |||||||||| ||||       ||||| |||    
T  41467292 cttagataatagttc---aatcctgcactgtctacctacatctttttcttttttgcatcagaccttattgtaagattatcgaga------catgaaccat 41467382  T
Q  729 cgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccag 828  Q
    || | ||||||||||| |||||||||| |  |||| |||||||||||||||||||  |||||||||||||| |||||||||||| |||||| |||| |||    
T  41467383 cggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcag 41467482  T
Q  829 tgccactgatgaacatgg---------atttgcggtgattccagaacatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtca 919  Q
     ||| ||||||||| |||          ||  | ||||||||| |||  |||||||||||||||| ||||  ||  |||||||||||||| ||   ||||    
T  41467483 ggcccctgatgaacttggctcttcaatcttcacagtgattccaaaactagctttcttttcatgtattccttgaggcatagattgatcatcatc---gtca 41467579  T
Q  920 tggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat 984  Q
     |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  41467580 aggtttatgatctcaatctcattttccagtttcactcttccaccggctggtccaaaaagagatat 41467644  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 41704414 - 41704313
Alignment:
Q  17 atatgatactgcaagaaattgtggtttcattgatggtgttcatcaatgaaagatagaacaatggatagtgttgtcactggtcaaagggaccgtaaggccg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704414 atatgatactgcaagaaattgtggtttcattgatggtgttcatcaatgaaagatagaacaatggatagtgttgtcactggtcaaagggaccgtaaggccg 41704315  T
Q  117 ct 118  Q
    ||    
T  41704314 ct 41704313  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 732 - 819
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
Q  732 aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 819  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||    
T  41506883 aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg 41506970  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 765 - 827
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
Q  765 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 827  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  41513161 aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41513223  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 718 - 804
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
Q  718 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa 804  Q
    ||||||||||||  | |||| ||||||||||||||||| |  |||| |||||||||||||||||||| ||| ||| ||||| |||||    
T  41497620 caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa 41497706  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 765 - 827
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
Q  765 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 827  Q
    |||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||||||    
T  41522096 aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41522158  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 869 - 982
Target Start/End: Original strand, 41513268 - 41513381
Alignment:
Q  869 gctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctg 968  Q
    |||||||||||||||||||||| ||| |||||   | ||||||||| |||| ||| ||||| |||||| |  || ||||||||||  ||||||| |||||    
T  41513268 gctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgtcaaggtatatgacctcaatattcttatccagtttcactcttccactagctg 41513367  T
Q  969 gtccaaaaagagat 982  Q
     | |||||||||||    
T  41513368 atacaaaaagagat 41513381  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1130 - 1163
Target Start/End: Complemental strand, 41703317 - 41703284
Alignment:
Q  1130 aaatacatgcataatttccatatacctgatgatg 1163  Q
    ||||||||||||||||||||||||||||||||||    
T  41703317 aaatacatgcataatttccatatacctgatgatg 41703284  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 718 - 792
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
Q  718 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac 792  Q
    |||| |||||||| | || ||||||||||||||||||| |  | || ||||| |||||||||||||| |||||||    
T  33077964 caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac 33078038  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 984
Target Start/End: Original strand, 33078159 - 33078232
Alignment:
Q  911 tcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat 984  Q
    ||||||||| ||||||||| ||| || || |||| || |||||  ||||||||| ||||| |||||||||||||    
T  33078159 tcgttgtcaaggtttatgacctccatatcctttttcaatttcaatcttccaccaactggtacaaaaagagatat 33078232  T

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Target: chr3 (Bit Score: 72; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 529 - 669
Target Start/End: Original strand, 36467105 - 36467243
Alignment:
Q  529 tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatcta 627  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| ||    
T  36467105 tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccattta 36467204  T
Q  628 ccttggataatagttcaataatcctgcactgtctgcctacat 669  Q
    |||| |||| ||||||   |||||||||||| ||||||||||    
T  36467205 ccttagatattagttc---aatcctgcactgcctgcctacat 36467243  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
Q  349 taactacttttaacaaactctaacaatatctaatgattctctaattata 397  Q
    ||||||||||||||||||||||||||||||||   |||| |||||||||    
T  33826671 taactacttttaacaaactctaacaatatctatcaattcactaattata 33826623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
Q  349 taactacttttaacaaactctaacaatatctaatgattctctaa 392  Q
    ||||||| |||||||||||||||||||||||||| | |||||||    
T  10908990 taactacatttaacaaactctaacaatatctaataaatctctaa 10908947  T

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