View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20954_high_10 (Length: 645)

Name: NF20954_high_10
Description: NF20954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20954_high_10
NF20954_high_10
[»] chr1 (7 HSPs)
chr1 (18-478)||(42623784-42624230)
chr1 (435-630)||(31230045-31230240)
chr1 (240-398)||(31230278-31230436)
chr1 (241-326)||(11398288-11398374)
chr1 (239-320)||(52946191-52946273)
chr1 (241-320)||(52935150-52935230)
chr1 (241-320)||(52942785-52942865)
[»] chr5 (2 HSPs)
chr5 (241-477)||(10548172-10548410)
chr5 (240-478)||(30803601-30803853)
[»] chr6 (3 HSPs)
chr6 (241-398)||(27368781-27368940)
chr6 (241-398)||(27459128-27459287)
chr6 (240-309)||(31600119-31600188)
[»] chr4 (3 HSPs)
chr4 (383-474)||(34441548-34441639)
chr4 (391-478)||(8332637-8332724)
chr4 (245-309)||(41380458-41380522)
[»] chr3 (3 HSPs)
chr3 (241-325)||(25493495-25493580)
chr3 (239-309)||(6302520-6302590)
chr3 (240-320)||(2146118-2146198)
[»] chr8 (2 HSPs)
chr8 (241-314)||(13881215-13881288)
chr8 (240-306)||(33116833-33116899)
[»] scaffold0590 (3 HSPs)
scaffold0590 (239-398)||(4960-5123)
scaffold0590 (386-469)||(4868-4951)
scaffold0590 (410-469)||(7545-7604)
[»] chr7 (4 HSPs)
chr7 (239-320)||(21905936-21906022)
chr7 (241-326)||(47762053-47762139)
chr7 (241-316)||(20290704-20290779)
chr7 (241-289)||(29753389-29753437)
[»] scaffold0036 (1 HSPs)
scaffold0036 (272-315)||(43752-43795)
[»] chr2 (1 HSPs)
chr2 (253-309)||(43453160-43453216)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 42623784 - 42624230
Alignment:
Q  18 agaaaatggttaatgtttctgaaagtgaattttttaattgagcaatgaaatgggagatttctgttaggccttgttttttgggataaaacataaccattgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42623784 agaaaatggttaatgtttctgaaagtgaattttttaattgagcaatgaaatgggagatttctgttaggccttgttttttgggataaaacataaccattgg 42623883  T
Q  118 taaataggttgctaattgatgctgatcaaatagacagagtttgaagaatttgtgttcatttggtgttggaaatgatggtttgattgtttctcttgatgta 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42623884 taaataggttgctaattgaagctgatcaaatagacagagtttgaagaatttgtgttcatttggtgttggaaatgatggtttgattgtttctcttgatgtg 42623983  T
Q  218 attgtgatatccataataatcaatgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaagg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  42623984 attgtgatatccataataatcaatgtaatgagtcaaagagttgaaaggagcattataggaaatgtgaatgtggactcttataaataagagaaagccaagg 42624083  T
Q  318 aaaaaaggaaagaagattgtgatgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctgcaattgtactctctcgttgtgtgt 417  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||    
T  42624084 aaaaaaggcatgaaaattgtgatgtcaacattcttctcctaacctctcctcttg--------------ttttgctgcaattgtactctctcgttgtgtgt 42624169  T
Q  418 tcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa 478  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  42624170 tcacagtgaaacattatcaattaattgagatttccttatatcaattttagtaccattacaa 42624230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 435 - 630
Target Start/End: Complemental strand, 31230240 - 31230045
Alignment:
Q  435 caattaactgagatttccttatatcagttttagtatcattacaaagtatgcccattttgaatctatcctttatgaaaatattggttaaggtttggagaat 534  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31230240 caattaattgagatttccttatatcaattttagtatcattacaaagtatgcccattttcaatctatcctttatgaaaatattggttaaggtttggagaat 31230141  T
Q  535 agttgttaaagctcaaaaaaggtttctttagggtagttcaagaaatatgagtaaaattgtttaggtcaagtgatcagatgtttgtaggtcaaaatc 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230140 agttgttaaagctcaaaaaaggtttctttagggtagttcaagaaatatgagtaaaattgtttaggtcaagtgatcagatgtttgtaggtcaaaatc 31230045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 240 - 398
Target Start/End: Complemental strand, 31230436 - 31230278
Alignment:
Q  240 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaag-ccaaggaaaaaaggaaagaagattgtg 338  Q
    ||||||||||||  ||||||  ||||||| |||| | ||||  |||| ||||| |||||||||| ||||||  |||| | || ||| |  ||| ||||||    
T  31230436 atgtaatgagtcttagagttagaaggggcgttatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaa-attgtg 31230338  T
Q  339 atgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctgcaatt 398  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||    
T  31230337 atgtcaacattctcctcctaacctcttctcttgttttactatccttatttccctgcaatt 31230278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 11398374 - 11398288
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaaaaagga 326  Q
    |||||||||||  ||||||  ||| |||||||| ||||||  |||| ||||| |||||||||| ||| ||||||||||||| |||||    
T  11398374 tgtaatgagtcttagagttagaagtggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataagga 11398288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 52946191 - 52946273
Alignment:
Q  239 aatgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaa 320  Q
    |||||||||||||  ||||||  |||||||||||| | ||||  |||| ||||| |||||||||| ||| |||||||||||||    
T  52946191 aatgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaa 52946273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 52935150 - 52935230
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaa 320  Q
    ||||||||||| || ||||  |||||||||||| | ||||  |||| ||||| |||||||||| ||| |||||||||||||    
T  52935150 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaa 52935230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 52942785 - 52942865
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaa 320  Q
    ||||||||||| || ||||  |||||||||||| | ||||  |||| ||||| |||||||||| ||| |||||||||||||    
T  52942785 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaa 52942865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 241 - 477
Target Start/End: Original strand, 10548172 - 10548410
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaa-gccaaggaaaaaaggaaagaagat-tgtg 338  Q
    |||||||||||  ||||||  |||||||||||| ||||||  |||| |||||  ||||||||| |||||| |||||||||| ||| |  ||| || ||||    
T  10548172 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgtg 10548271  T
Q  339 atgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctgcaattgtactctctcgttgtgtgttcacagtgaaacattatcaat 438  Q
    |||||||||||||||| ||||||||| ||||  |||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||    
T  10548272 atgtcaacattcttcttctaacctcttctctcattttactatccttattttcctgcaattttactctgtcattgtgtgttcacagtgaaacattatcaat 10548371  T
Q  439 taactgagatttccttatatcagttttagtatcattaca 477  Q
    ||| |||||||||||||||||  |||||||| |||||||    
T  10548372 taattgagatttccttatatccattttagtaccattaca 10548410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 240 - 478
Target Start/End: Complemental strand, 30803853 - 30803601
Alignment:
Q  240 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaaggaaaaaaggaaagaagattgtga 339  Q
    ||||||||||||||| || | |||||| || ||||| |||| ||||| |  || |||||||||||||||| |||||||||| | |  | | | |||||||    
T  30803853 atgtaatgagtcaaatagcttaaaggg-caatataggaaatttgaatataaacccttataaataagagaatgccaaggaaagaggatatggaaattgtga 30803755  T
Q  340 tgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctg---------------caattgtactctctcgttgtgtgttcacagt 424  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||               ||||| |||| |||| ||||||||||| |||    
T  30803754 tgtcaacattcttctcctaacctcttctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcattgtgtgttcaaagt 30803655  T
Q  425 gaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa 478  Q
    ||||||||||||||||| | ||||| |||||||||| |||||||| | ||||||    
T  30803654 gaaacattatcaattaatttagattcccttatatcaattttagtaccgttacaa 30803601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 27368781 - 27368940
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaag-gaaaaaaggaaagaagat-tgtg 338  Q
    |||||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||| |||||||||||| |||||| | |  ||| || ||||    
T  27368781 tgtaatgagtcaaagagttgaaagaggtattacaggaaatatgaatgtggactcttataaatacgagaaagccaagagaaaaaggcatggaatatgtgtg 27368880  T
Q  339 atgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctgcaatt 398  Q
    |||||||||||||||| |||||| || ||||  ||||||||||||||||||  |||||||    
T  27368881 atgtcaacattcttcttctaaccacttctctcattttactatccttattttcttgcaatt 27368940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 27459128 - 27459287
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaag-gaaaaaaggaaagaagat-tgtg 338  Q
    |||||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||| |||||||||||| |||||| | |  ||| || ||||    
T  27459128 tgtaatgagtcaaagagttgaaagaggtattacaggaaatatgaatgtggactcttataaatacgagaaagccaagagaaaaaggcatggaatatgtgtg 27459227  T
Q  339 atgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctgcaatt 398  Q
    |||||||||||||||| |||||| || ||||  ||||||||||||||||||  |||||||    
T  27459228 atgtcaacattcttcttctaaccacttctctcattttactatccttattttcttgcaatt 27459287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 31600188 - 31600119
Alignment:
Q  240 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 309  Q
    ||||||||||||||||| |||||| ||||| ||||||||||  ||||||||||  |||| ||||||||||    
T  31600188 atgtaatgagtcaaagaattgaaaagggcaatatagaaaataggaatgtggacctttatgaataagagaa 31600119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 34441639 - 34441548
Alignment:
Q  383 ttattttgctgcaattgtactctctcgttgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcatt 474  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  34441639 ttattttcctgcaattgtactctgtcattgtgtgttcacagtgaaacattatcaattaattgagatttccttatatcaattttagtaccatt 34441548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 8332637 - 8332724
Alignment:
Q  391 ctgcaattgtactctctcgttgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa 478  Q
    |||||||| |||||| |  |||||| |||||||  |||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  8332637 ctgcaattatactctgtgattgtgtattcacagcaaaacattatcaattaattgagatttccttatatcaattttagtaccattacaa 8332724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 41380458 - 41380522
Alignment:
Q  245 atgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 309  Q
    |||||| |||||||||| ||||| | |||||||||| |||||||||||| | |||||||||||||    
T  41380458 atgagttaaagagttgataggggtaatatagaaaatgtgaatgtggactttaataaataagagaa 41380522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 25493495 - 25493580
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgt-ggactcttataaataagagaaagccaaggaaaaaagg 325  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| || | ||||||||||||||||||||||||||| |||||||    
T  25493495 tgtaatgagtcaaagagttgaaaggggcaatatagaaaatgtgaacgtcgaactcttataaataagagaaagccaagggaaaaagg 25493580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 6302520 - 6302590
Alignment:
Q  239 aatgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 309  Q
    ||||||||||||||||||| | ||| ||||| |||||||||| |||||||| |||||||||||||||||||    
T  6302520 aatgtaatgagtcaaagagcttaaaagggcaatatagaaaatatgaatgtgaactcttataaataagagaa 6302590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 2146118 - 2146198
Alignment:
Q  240 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaaggaaa 320  Q
    |||||||||||||||||||| ||||| ||| |||   |||| |||||||| || ||||||||||||| || || |||||||    
T  2146118 atgtaatgagtcaaagagtttaaaggagcaatatttgaaatatgaatgtgaacgcttataaataagataaggcaaaggaaa 2146198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 13881215 - 13881288
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagcca 314  Q
    ||||||||||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  13881215 tgtaatgagtcaaggagttaaaaggagcaatatagaaaatgtgaatgtggactcttataaataagagaaggcca 13881288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 33116833 - 33116899
Alignment:
Q  240 atgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataaga 306  Q
    |||||| ||||||||||||||||| || || ||||| |||| |||||||| ||||||||||| ||||    
T  33116833 atgtaacgagtcaaagagttgaaaaggacaatataggaaatatgaatgtgaactcttataaacaaga 33116899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 398
Target Start/End: Complemental strand, 5123 - 4960
Alignment:
Q  239 aatgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttata--aataagagaaa-gccaaggaaaaaaggaaagaagat- 334  Q
    |||||||||||||  ||||||  |||||||||||| | ||||  |||| ||||| ||||||  |||| |||||| |||||||||| ||| |   || ||     
T  5123 aatgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatg 5024  T
Q  335 tgtgatgtcaacattcttctcctaacctctcctcttgttttactatccttattttgctgcaatt 398  Q
    |||||||||||||||||||| ||||||||| ||||  |||||||||||||||||| ||||||||    
T  5023 tgtgatgtcaacattcttcttctaacctcttctctcattttactatccttattttcctgcaatt 4960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 4951 - 4868
Alignment:
Q  386 ttttgctgcaattgtactctctcgttgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagta 469  Q
    |||| ||||| ||||||||  || |||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||    
T  4951 ttttcctgcagttgtactcaatcattgtatgttcacagggaaacattatcaattaattgagatttccttatatcaattttagta 4868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 469
Target Start/End: Complemental strand, 7604 - 7545
Alignment:
Q  410 ttgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagta 469  Q
    |||| |||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  7604 ttgtatgttcatagtgaaacattatcaattaattgagatttccttttatcaattttagta 7545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 21905936 - 21906022
Alignment:
Q  239 aatgtaatgagtcaaagagttgaaaggggcattata-----gaaaatctgaatgtggactcttataaataagagaaagccaaggaaa 320  Q
    ||||||||||||||||||| ||||| ||||| ||||     | |||| |||| |||||| |||||||||||||||| ||||||||||    
T  21905936 aatgtaatgagtcaaagagatgaaaagggcaatataatataggaaatatgaaagtggacacttataaataagagaaggccaaggaaa 21906022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 47762053 - 47762139
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagag-aaagccaaggaaaaaagga 326  Q
    |||||||||||  ||||||  |||||||||||| ||||||  |||| ||||| |||||||||| ||| ||||||||||||| |||||    
T  47762053 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataagga 47762139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 20290779 - 20290704
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaaagccaag 316  Q
    ||||||||||||||| | ||||| ||  | ||| | |||| ||||| ||||| |||||||||||||||||||||||    
T  20290779 tgtaatgagtcaaagggctgaaaaggataatatggtaaatatgaatatggacccttataaataagagaaagccaag 20290704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 29753389 - 29753437
Alignment:
Q  241 tgtaatgagtcaaagagttgaaaggggcattatagaaaatctgaatgtg 289  Q
    ||||||||||||||||| |||||  |||| |||||||||| ||||||||    
T  29753389 tgtaatgagtcaaagagatgaaaatggcaatatagaaaatatgaatgtg 29753437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 43795 - 43752
Alignment:
Q  272 atagaaaatctgaatgtggactcttataaataagagaaagccaa 315  Q
    |||| |||| |||||||||||||||||||||||||||| |||||    
T  43795 ataggaaatttgaatgtggactcttataaataagagaaggccaa 43752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 43453216 - 43453160
Alignment:
Q  253 aagagttgaaaggggcattatagaaaatctgaatgtggactcttataaataagagaa 309  Q
    ||||||| ||| || || ||||| |||| |||||||| |||||||||||||||||||    
T  43453216 aagagttaaaaaggacaatataggaaatgtgaatgtgaactcttataaataagagaa 43453160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University